Browse Element(s) Details


Os.52764.1.S1_at

Description gb:AK069138.1
DB_XREF= gi:32979162
TID=Os.52764.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023006B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006B12, full insert sequence.
FL= gb:AK069138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0320010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52764.1.S1_at--173--3091Chr11:1161813..1161836 (24 bp)
AATAAGCTAGATAGACTTGTCAAGC
LOC_Os11g03200
Os.52764.1.S1_at--281--351NONE
ATAAGCTAGATAGACTTGTCAAGCT
NONE
Os.52764.1.S1_at--465--2091Chr11:1161405..1161429 (25 bp)
ACATCAAGCCGGCTTAGACATGTGA
LOC_Os11g03200
Os.52764.1.S1_at--824--371Chr11:1161403..1161427 (25 bp)
ATCAAGCCGGCTTAGACATGTGATG
LOC_Os11g03200
Os.52764.1.S1_at--723--9711Chr11:1161402..1161426 (25 bp)
TCAAGCCGGCTTAGACATGTGATGG
LOC_Os11g03200
Os.52764.1.S1_at--57--2671Chr11:1161400..1161424 (25 bp)
AAGCCGGCTTAGACATGTGATGGGA
LOC_Os11g03200
Os.52764.1.S1_at--295--4491Chr11:1161398..1161422 (25 bp)
GCCGGCTTAGACATGTGATGGGACA
LOC_Os11g03200
Os.52764.1.S1_at--1155--4251Chr11:1161397..1161421 (25 bp)
CCGGCTTAGACATGTGATGGGACAC
LOC_Os11g03200
Os.52764.1.S1_at--263--7651Chr11:1161293..1161317 (25 bp)
GGGATGAGAATCTGATTATCAACAG
LOC_Os11g03200
Os.52764.1.S1_at--27--5971Chr11:1161288..1161312 (25 bp)
GAGAATCTGATTATCAACAGTTAAG
LOC_Os11g03200
Os.52764.1.S1_at--648--5251Chr11:1161286..1161310 (25 bp)
GAATCTGATTATCAACAGTTAAGAT
LOC_Os11g03200
Target Sequence 
AATAAGCTAGATAGACTTGTCAAGCTCTTCAAGAATCTTGAAGCATGTGGCCGTAAACCTCCAAGCAAAGATATCGTACG
GAAAGTTGAAGATGCATATGAAATGCTTGGTTTAGTGGAGGAGAAAAAGGAATTGCTTGAGAAATACAAGGATTTGTTTG
ACAAGCCATCGAGTAATGACAAAAAGAAAGGCCGGCAGTTCAAAAAGGTTGAGAAGAACATCAAGCCGGCTTAGACATGT
GATGGGACACGCCTGCACCTCTAAGCTTAGAGCATAGAACGGAAACATCTGAATAGAAATCTGCCAGTGAAGTTGTTACT
CTTTCCTTTGGGATGAGAATCTGATTATCAACAGTTAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis