Browse Element(s) Details


Os.52764.1.S1_x_at

Description gb:AK069138.1
DB_XREF= gi:32979162
TID=Os.52764.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023006B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006B12, full insert sequence.
FL= gb:AK069138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0320011/11pentatricopeptide, putative, expressed
LOC_Os12g029503/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52764.1.S1_x_at--676--1371Chr11:1161917..1161941 (25 bp)
AGAGCGGATGAAGCTTGCAGAATCT
LOC_Os11g03200
Os.52764.1.S1_x_at--944--6472Chr12:1093589..1093613 (25 bp)
GATAGCCCATGATCTACAATCAGTT
LOC_Os12g02950
Os.52764.1.S1_x_at--669--2232Chr12:1093574..1093598 (25 bp)
ACAATCAGTTCCATGGCGGTTTTGC
LOC_Os12g02950
Os.52764.1.S1_x_at--484--7872Chr12:1093557..1093581 (25 bp)
GGTTTTGCCGTCTTATGTTGGGTAT
LOC_Os12g02950
Os.52764.1.S1_x_at--729--6491Chr11:1161613..1161827 (25 bp)
GATAGACTTGTCAAGCTCTTCAAGA
LOC_Os11g03200
Os.52764.1.S1_x_at--711--1471Chr11:1161591..1161615 (25 bp)
AGAATCTTGAAGCATGTGGCCGTAA
LOC_Os11g03200
Os.52764.1.S1_x_at--1093--7531Chr11:1161576..1161600 (25 bp)
GTGGCCGTAAACCTCCAAGCAAAGA
LOC_Os11g03200
Os.52764.1.S1_x_at--979--3551Chr11:1161404..1161428 (25 bp)
CATCAAGCCGGCTTAGACATGTGAT
LOC_Os11g03200
Os.52764.1.S1_x_at--1156--4251Chr11:1161397..1161421 (25 bp)
CCGGCTTAGACATGTGATGGGACAC
LOC_Os11g03200
Os.52764.1.S1_x_at--32--6311Chr11:1161291..1161315 (25 bp)
GATGAGAATCTGATTATCAACAGTT
LOC_Os11g03200
Os.52764.1.S1_x_at--356--4013Chr07:11362227..11362250 (24 bp)
CGTCCAGATTTGTTGCTGACAGTGC
NONE
Target Sequence 
AGAGCGGATGAAGCTTGCAGAATCTGGGAGTTTAAGATAGCCCATGATCTACAATCAGTTCCATGGCGGTTTTGCCGTCT
TATGTTGGGTATTTACTACAGAAATAATAAGCTAGATAGACTTGTCAAGCTCTTCAAGAATCTTGAAGCATGTGGCCGTA
AACCTCCAAGCAAAGATATCGTACGGAAAGTTGAAGATGCATATGAAATGCTTGGTTTAGTGGAGGAGAAAAAGGAATTG
CTTGAGAAATACAAGGATTTGTTTGACAAGCCATCGAGTAATGACAAAAAGAAAGGCCGGCAGTTCAAAAAGGTTGAGAA
GAACATCAAGCCGGCTTAGACATGTGATGGGACACGCCTGCACCTCTAAGCTTAGAGCATAGAACGGAAACATCTGAATA
GAAATCTGCCAGTGAAGTTGTTACTCTTTCCTTTGGGATGAGAATCTGATTATCAACAGTTAAGATTAGAAGTATGCATG
GTAGTGCAGTTAACATTGTTGTGAGTCATTTTCCTTCGTCCAGATTTGTTGCTGACAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis