Browse Element(s) Details


Os.52795.1.S1_at

Description gb:AK069310.1
DB_XREF= gi:32979334
TID=Os.52795.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012K12, full insert sequence.
FL= gb:AK069310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4123811/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41220Os.17140.1.S1_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220Os.17140.1.S1_x_at11/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.12229.1.S1_at2/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41220OsAffx.16833.2.S1_at1/114+24236131..24239951transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g41229Os.7694.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41229Os.51233.1.S1_at11/114+24242092..24249850Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g41250Os.10194.1.S1_at11/114+24252614..24260377U-box domain containing protein, expressed
LOC_Os04g41238Os.52795.1.S1_at11/114+24253348..24254720expressed protein
LOC_Os04g41260Os.55586.1.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41260Os.27575.2.S1_at10/114+24261662..24265847Protoporphyrinogen oxidase, chloroplast/mitochondrial precursor, putative, expressed
LOC_Os04g41270OsAffx.13097.1.S1_s_at11/114+24273435..24276459hypothetical protein
LOC_Os04g41270Os.46613.1.S2_at4/114+24273435..24276459hypothetical protein
LOC_Os04g41280OsAffx.26413.1.S1_at9/114+24278521..24281134expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52795.1.S1_at--817--1371Chr04:24253898..24253922 (25 bp)
AGACCGTCCAAGACCTTTCAGCGTT
LOC_Os04g41238
Os.52795.1.S1_at--761--10311Chr04:24253883..24253907 (25 bp)
TTTCAGCGTTTCTCCCTCCTTTTAG
LOC_Os04g41238
Os.52795.1.S1_at--1063--10431Chr04:24253862..24253886 (25 bp)
TTAGGCTTCCTTCCCTTGAAGGACG
LOC_Os04g41238
Os.52795.1.S1_at--1063--951Chr04:24253843..24253867 (25 bp)
AGGACGTTGGAGTGTGTTGATCTAA
LOC_Os04g41238
Os.52795.1.S1_at--694--2411Chr04:24253790..24253814 (25 bp)
AAAACTCATTGTGGGTGGCCTTCGG
LOC_Os04g41238
Os.52795.1.S1_at--665--7671Chr04:24253654..24253678 (25 bp)
GGGTGGCCTAGGACTTCTACAACCT
LOC_Os04g41238
Os.52795.1.S1_at--845--9511Chr04:24253639..24253663 (25 bp)
TCTACAACCTTTCTTTGGCCTTTCT
LOC_Os04g41238
Os.52795.1.S1_at--882--7271Chr04:24253537..24253561 (25 bp)
GGCCGGGTAATTTTGTAGATGTCGT
LOC_Os04g41238
Os.52795.1.S1_at--143--3471Chr04:24253428..24253452 (25 bp)
CAGGGCTTCTGCGTTTCTATAGGTG
LOC_Os04g41238
Os.52795.1.S1_at--1090--4631Chr04:24253418..24253442 (25 bp)
GCGTTTCTATAGGTGAAGCCTGCCC
LOC_Os04g41238
Os.52795.1.S1_at--182--9171Chr04:24253398..24253422 (25 bp)
TGCCCTGTGTAAGCTCATTTGGCTT
LOC_Os04g41238
Target Sequence 
AGACCGTCCAAGACCTTTCAGCGTTTCTCCCTCCTTTTAGGCTTCCTTCCCTTGAAGGACGTTGGAGTGTGTTGATCTAA
CAAGCAACTCGATAAAGTTTGATTGAAGAAAACTCATTGTGGGTGGCCTTCGGCCACATCTTTCAGTGCCCTCCCTCTTC
TGGGGCTTCCTTCCCCCAGAGGGCGTCGGCGGGCTTTGATCCAAACAACAATAAGATCAAGTTAGCTTCTTGATGACTTC
ATGCGGGTGGCCTAGGACTTCTACAACCTTTCTTTGGCCTTTCTTCTATTCCGGCATGCTTGTGGCTGCGTGAGGAAATG
GATGTTGATAAGCTAGGGTGTTAGCTTTAGGTTTTGGTTTTGGCCGGGTAATTTTGTAGATGTCGTTTGTCAATTGTTAT
ATTTTAGGAGGTTTTCCTTTCTCTGTTCTCTCCTCTTTGTATTCCCCGTGTATTCTGTTCTCCTATCCTCCAGGGCTTCT
GCGTTTCTATAGGTGAAGCCTGCCCTGTGTAAGCTCATTTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis