Browse Element(s) Details


Os.52797.1.S1_at

Description gb:AK069314.1
DB_XREF= gi:32979338
TID=Os.52797.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011A15, full insert sequence.
FL= gb:AK069314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g086807/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08640Os.15759.1.S1_at11/113+4425830..4428044Origin recognition complex subunit 2, putative, expressed
LOC_Os03g08660OsAffx.25032.1.S1_s_at2/113+4443307..4444212satase isoform II, putative
LOC_Os03g08670OsAffx.3175.1.S1_at11/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_x_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08670Os.31623.1.S1_at1/113+4446746..4447704hypothetical protein
LOC_Os03g08680Os.52797.1.S1_at7/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08680Os.19940.1.S1_s_at1/113+4450739..4455226Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g08690Os.50581.1.S1_at11/113+4458791..4460364expressed protein
LOC_Os03g08700Os.54630.1.S1_at11/113+4461999..4468617expressed protein
LOC_Os03g08710OsAffx.12788.1.S1_at11/113+4469068..4469445expressed protein
LOC_Os03g08720Os.55882.1.S1_at11/113+4471201..4473165Transferase family protein, expressed
LOC_Os03g08730Os.31563.1.S1_at11/113+4475846..4479962uroporphyrinogen-III synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52797.1.S1_at--815--10271Chr03:4453021..4453045 (25 bp)
TTTGCATCTCTTCTAACTGGGTAAT
LOC_Os03g08680
Os.52797.1.S1_at--1083--7291Chr03:4452965..4452989 (25 bp)
GTGCGCAGTTGCTTTTAGTCATCAT
LOC_Os03g08680
Os.52797.1.S1_at--107--7131Chr03:4452948..4452972 (25 bp)
GTCATCATGATTTGTCTACCGTGCT
LOC_Os03g08680
Os.52797.1.S1_at--1115--9531Chr03:4452934..4452958 (25 bp)
TCTACCGTGCTTCAGAGTGCAGCAA
LOC_Os03g08680
Os.52797.1.S1_at--226--651Chr03:4452904..4452928 (25 bp)
ATGCATCCACTACCAACAGTTCATT
LOC_Os03g08680
Os.52797.1.S1_at--970--9751Chr03:4452206..4452230 (25 bp)
TAAGGGCTTGTTCAGCACCCAGGGT
LOC_Os03g08680
Os.52797.1.S1_at--1041--4651Chr03:4452065..4452089 (25 bp)
GCGTCCATTGTCTAGTTGTGTGCCT
LOC_Os03g08680
Os.52797.1.S1_at--854--10711NONE
TTGCTCTGAGCTTTCCAGATGCAGC
NONE
Os.52797.1.S1_at--221--31Chr03:4449790..4449814 (25 bp)
ATTGGCTTTTGCTTGACGAGGTCTT
NONE
Os.52797.1.S1_at--286--8231Chr03:4449742..4449766 (25 bp)
GGCAACCCTGAATCTGCATAGCATT
NONE
Os.52797.1.S1_at--290--2991Chr03:4449715..4449739 (25 bp)
AATGTCTCACTGCAACACGTTGTCT
NONE
Target Sequence 
TTTGCATCTCTTCTAACTGGGTAATAAACAAATTGCATGCTAATAAAACTTTCAATGTGCGCAGTTGCTTTTAGTCATCA
TGATTTGTCTACCGTGCTTCAGAGTGCAGCAACACTCATGCATCCACTACCAACAGTTCATTTGGTGTCTACCATTGGAT
ATGGACAAGGTTTGTTCACTAAGAGGGGATTTAAGGGCTTGTTCAGCACCCAGGGTCCTCTGCCAAGTTTTGCAGTTCTC
TCTGGCGTCCATTGTCTAGTTGTGTGCCTGTTGAGAAGGCTGCGTGGCAAAGATGACATTGTTAATGCTGGAATAGCTGG
TTGTTGCACTAGCCTTGCTCTGAGCTTTCCAGATGCAGCTCATGTTGATTGGCTTTTGCTTGACGAGGTCTTACCAGGGA
GAAGAAGTTAATTATGGCAACCCTGAATCTGCATAGCATTTTAATGTCTCACTGCAACACGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis