Browse Element(s) Details


Os.52810.1.S1_at

Description gb:AK069402.1
DB_XREF= gi:32979426
TID=Os.52810.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011C17, full insert sequence.
FL= gb:AK069402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52810.1.S1_at--1010--5771Chr03:24788685..24788709 (25 bp)
GACGACCGTGGCGATTACGACGGCA
LOC_Os03g44190
Os.52810.1.S1_at--70--7551Chr03:24788678..24788702 (25 bp)
GTGGCGATTACGACGGCATCGTGAC
LOC_Os03g44190
Os.52810.1.S1_at--892--1851Chr03:24788648..24788672 (25 bp)
ACGACGTGGAGTGCGGTGTGCTGGT
LOC_Os03g44190
Os.52810.1.S1_at--348--7471Chr03:24788633..24788657 (25 bp)
GTGTGCTGGTGTGGGAGCGCGACGA
LOC_Os03g44190
Os.52810.1.S1_at--815--9151Chr03:24788437..24788461 (25 bp)
TGCCTCACCGAGAAACCGCCTAGAA
LOC_Os03g44190
Os.52810.1.S1_at--801--7391Chr03:24788388..24788412 (25 bp)
GTGATGATGTGGCTTCCTAGCATGT
LOC_Os03g44190
Os.52810.1.S1_at--1097--6291Chr03:24788386..24788410 (25 bp)
GATGATGTGGCTTCCTAGCATGTGG
LOC_Os03g44190
Os.52810.1.S1_at--1051--6751Chr03:24788269..24788293 (25 bp)
GTTAAGGGACCTCGTGTATCTGGTT
LOC_Os03g44190
Os.52810.1.S1_at--508--1077Chr04:4747946..4747999 (23 bp)
AGGGACCTCGTGTATCTGGTTTTGC
NONE
Os.52810.1.S1_at--573--232Chr03:24788176..24788200 (25 bp)
ATATTATTTCCTCCGTTTTACATAT
LOC_Os03g44190
Os.52810.1.S1_at--676--1911Chr10:2191148..2191229 (25 bp)
ATTTCCTCCGTTTTACATATATATG
NONE
Target Sequence 
GACGACCGTGGCGATTACGACGGCATCGTGACGGAGTACGACGTGGAGTGCGGTGTGCTGGTGTGGGAGCGCGACGAGCA
CGAGGGGCGGCGGGTGTGGGCGACGGCGCGGCATCGCCCCGTCCTCTTCGCGCTCACCCTGGCCACCGCCGCAGTCGCCC
TACCCTTCTCCCCCAGGGCGCCGGCCGCCGTCGCGCCGCCGCCGCCCTCCTCTCTCCCGTCTCGCCTGCCGACGTCGCGC
CGCCGCTTTGCCTCACCGAGAAACCGCCTAGAAAGAGAGAAGTGGAAAAGGAGGGAAGTGATGATGTGGCTTCCTAGCAT
GTGGGGCCCACGTGGGTCCCACGCTGACTCAGCAGCCACGTAGGACAAAACCGGGGTCAAAACCACCTAAGGACCTCGGG
TGACCGGTTTTATATAGTTAAGGGACCTCGTGTATCTGGTTTTGCGGTTCGAGGACGTTTTTGTATCCCGATGACAAGTT
GAGGGACCTTTGGTGTACTTTTTCCTTAAATATTATTTCCTCCGTTTTACATATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis