Browse Element(s) Details


Os.52835.2.S1_at

Description gb:AK110830.1
DB_XREF= gi:32996039
TID=Os.52835.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A02, full insert sequence.
FL= gb:AK110830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g066301/11Tubby protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06640Os.10361.1.S1_at11/1112+3217992..3221887expressed protein
LOC_Os12g06640Os.10232.1.A1_at9/1112+3217992..3221887expressed protein
LOC_Os12g06650Os.10319.1.S1_at11/1112+3225522..3228147pentatricopeptide, putative, expressed
LOC_Os12g06660Os.47560.1.S1_at11/1112+3230531..3233557Actin-7, putative, expressed
LOC_Os12g06670Os.21261.1.A1_at11/1112+3235061..3242464protein kinase family protein, putative, expressed
LOC_Os12g06670OsAffx.5280.1.S1_at5/1112+3235061..3242464protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52835.2.S1_at--899--10371Chr08:18938135..18938159 (25 bp)
TTTTCTCCCCTTCTCGTGATTGATA
NONE
Os.52835.2.S1_at--281--8191Chr08:18938062..18938086 (25 bp)
GGAAGGCTTGACTCGCTTGACTCGG
NONE
Os.52835.2.S1_at--1108--4091Chr08:18938025..18938049 (25 bp)
CGACAGGCGACAGCTGGTTCGGCTC
NONE
Os.52835.2.S1_at--299--8371Chr08:18937942..18937966 (25 bp)
GGCGTGAGCCAACGGTTTCTTGCAA
NONE
Os.52835.2.S1_at--658--10731Chr08:18937923..18937947 (25 bp)
TTGCAACCGCGTTGTTGACGCATGA
NONE
Os.52835.2.S1_at--541--3131Chr08:18937896..18937920 (25 bp)
AATTTTTAAGAACCCCGCTATGCAT
NONE
Os.52835.2.S1_at--636--10131Chr08:18937878..18937902 (25 bp)
TATGCATCCGATGTTCTTTGTCACA
NONE
Os.52835.2.S1_at--1128--5431Chr08:18937837..18937861 (25 bp)
GACCGGACCGGTCATTAAACCAGCG
NONE
Os.52835.2.S1_at--827--1711Chr08:18937819..18937843 (25 bp)
ACCAGCGATGCTCTCAATTCAATGA
NONE
Os.52835.2.S1_at--296--2634Chr06:5954429..5954641 (25 bp)
AACCACTGGTTTGAAGCGGTTCAAT
NONE
Os.52835.2.S1_at--209--471Chr08:18937699..18937723 (25 bp)
ATCGTAATCTAGTGGTTGGTTGGTT
NONE
Target Sequence 
TTTTCTCCCCTTCTCGTGATTGATACGGCGAGGCCACGTGGCGGCCGTACGCGAGGCCAGCCGCAGCCGCACCGGAAGGC
TTGACTCGCTTGACTCGGGTCCGAGCCCGGCGACAGGCGACAGCTGGTTCGGCTCGGTGGCGGTGCACGCGCACGCAGCT
CGAACGGAGGCTGGGTCGCAGCGCGGCGCGGGTGGCGTGAGCCAACGGTTTCTTGCAACCGCGTTGTTGACGCATGAGTA
ATTTTTAAGAACCCCGCTATGCATCCGATGTTCTTTGTCACATCATAATAATTATTAAGACCGGACCGGTCATTAAACCA
GCGATGCTCTCAATTCAATGATTTATTGGTTCAACTGGTTAAAGTGTTGAACCACTGGTTTGAAGCGGTTCAATCTAATG
TAAATATATTGTTTATCCCTTCAAAACACAAGGTATATCGTAATCTAGTGGTTGGTTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52835.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis