Browse Element(s) Details


Os.52836.1.S1_at

Description gb:AK069521.1
DB_XREF= gi:32979545
TID=Os.52836.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022O05, full insert sequence.
FL= gb:AK069521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0321011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03174Os.20262.1.S1_at10/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03174Os.52448.2.S1_at3/115+1256917..1263476beta3-glucuronyltransferase, putative, expressed
LOC_Os05g03190Os.11677.1.S1_x_at10/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03190Os.11677.2.S1_at7/115+1269444..1273561IQ calmodulin-binding motif family protein, expressed
LOC_Os05g03200OsAffx.4238.1.S1_at11/115+1273739..1276638expressed protein
LOC_Os05g03200Os.48994.1.A1_at10/115+1273739..1276638expressed protein
LOC_Os05g03210Os.52836.1.S1_at11/115+1278471..1280225F-box domain containing protein, expressed
LOC_Os05g03220NANA5+1281779..1283008retrotransposon protein, putative, unclassified
LOC_Os05g03230OsAffx.21465.1.S1_x_at2/115+1284947..1286285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03240OsAffx.4239.1.S1_at11/115+1288595..1289616hypothetical protein
LOC_Os05g03250NANA5+1291974..1293965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g03260NANA5+1295248..1295865hypothetical protein
LOC_Os05g03270Os.47463.1.S1_x_at6/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03270Os.14491.2.S1_x_at5/115+1300906..1304606transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52836.1.S1_at--678--3091Chr05:1279047..1279071 (25 bp)
AATACTGCAGGTGTTCGAGGTGGAC
LOC_Os05g03210
Os.52836.1.S1_at--828--4311Chr05:1278919..1278943 (25 bp)
CCATCCTTGGCAACACGGTGTATCT
LOC_Os05g03210
Os.52836.1.S1_at--473--431Chr05:1278898..1278922 (25 bp)
ATCTTGGGATGAACAGCTGCTGCGC
LOC_Os05g03210
Os.52836.1.S1_at--823--10811Chr05:1278860..1278884 (25 bp)
TTGTGCCACCTCAAGGACCGGACTG
LOC_Os05g03210
Os.52836.1.S1_at--751--1531Chr05:1278820..1278844 (25 bp)
AGCATGTCCTCGAAAGTGGGCGCAA
LOC_Os05g03210
Os.52836.1.S1_at--584--10791Chr05:1278784..1278808 (25 bp)
TTGTTGATATCAGCCTCTTCCACCT
LOC_Os05g03210
Os.52836.1.S1_at--763--931Chr05:1278759..1278783 (25 bp)
AGGAAGGATTGTGCCCTTTGCACGC
LOC_Os05g03210
Os.52836.1.S1_at--27--1351Chr05:1278720..1278744 (25 bp)
AGAGTACCTTGTATGCAGCGTCGGC
LOC_Os05g03210
Os.52836.1.S1_at--8--2371Chr05:1278661..1278685 (25 bp)
AAAGCCTCACTGCTAGCTGATGCTA
LOC_Os05g03210
Os.52836.1.S1_at--1140--7051Chr05:1278536..1278560 (25 bp)
GTAATCTTATTTATCAGCCACTTGG
LOC_Os05g03210
Os.52836.1.S1_at--342--7871Chr05:1278513..1278537 (25 bp)
GGTTTGAATATTTATGTCCCTCCAC
LOC_Os05g03210
Target Sequence 
AATACTGCAGGTGTTCGAGGTGGACATCGTCAGGAAGAAGCTGGTACGCGTGGACGGCATCGCCGACGACCGGGCGGTGT
TCGTCGGCGATGTGGCGTGCGTCTCGCTCTCTATCGACAGGTTCCCTTCCATCCTTGGCAACACGGTGTATCTTGGGATG
AACAGCTGCTGCGCTGTGGGCTTTGGCTTGTGCCACCTCAAGGACCGGACTGTTGAGCCGCGGCTCGAGCATGTCCTCGA
AAGTGGGCGCAAGGCGCCACTCCTTGTTGATATCAGCCTCTTCCACCTAGGAAGGATTGTGCCCTTTGCACGCCCCTGCA
CTCTTGAAGAGTACCTTGTATGCAGCGTCGGCTTCAAGAACGGGATCAAAGATTGATATTATTGTCAAAGCCTCACTGCT
AGCTGATGCTAATTAAGAAGCTTATTACTACCACTACTATTTATTGTTAGTAAGTGTAGTTGGTTAATTTACTCTTTGTA
TGTATGGCTGACTTTGATATGGTTTTAGATTGTAATCTTATTTATCAGCCACTTGGTTTGAATATTTATGTCCCTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52836.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis