Browse Element(s) Details


Os.52838.1.S1_at

Description gb:AK069532.1
DB_XREF= gi:32979556
TID=Os.52838.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019G17, full insert sequence.
FL= gb:AK069532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5965011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59600OsAffx.25771.1.S1_at11/113+33875089..33876906EF hand family protein, expressed
LOC_Os03g59610Os.26674.1.S1_at11/113+33877932..33880305Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52838.1.S1_at--636--8811Chr03:33906402..33906426 (25 bp)
TGTTGCTTAGCTACCATCACATAAG
LOC_Os03g59650
Os.52838.1.S1_at--907--6471Chr03:33906446..33906470 (25 bp)
GATACATACTTACCAGGGATCCAGT
LOC_Os03g59650
Os.52838.1.S1_at--957--7651Chr03:33906461..33906485 (25 bp)
GGGATCCAGTATCCTCTTTCTGCAA
LOC_Os03g59650
Os.52838.1.S1_at--985--2971Chr03:33906509..33906533 (25 bp)
AATGGGACTCATCTGTGGTGCGCTC
LOC_Os03g59650
Os.52838.1.S1_at--367--8611Chr03:33906524..33906548 (25 bp)
TGGTGCGCTCATGCTGATGCTTATC
LOC_Os03g59650
Os.52838.1.S1_at--228--6331Chr03:33906539..33906563 (25 bp)
GATGCTTATCGCTGGCAACCTTTGG
LOC_Os03g59650
Os.52838.1.S1_at--948--4431Chr03:33906574..33906598 (25 bp)
GCCATATATCCATTTTTCTCTTTCC
LOC_Os03g59650
Os.52838.1.S1_at--18--5151Chr03:33906803..33906827 (25 bp)
GCAACAGTTTTTCTCATTCGTACAC
LOC_Os03g59650
Os.52838.1.S1_at--117--9591Chr03:33906816..33906840 (25 bp)
TCATTCGTACACTTGGCCCGGAAAA
LOC_Os03g59650
Os.52838.1.S1_at--725--5271Chr03:33906865..33906889 (25 bp)
GAATGTTTCTGTTTGTTGTCTGTTG
LOC_Os03g59650
Os.52838.1.S1_at--791--2411Chr03:33906915..33906939 (25 bp)
AAAACACACCTCTCACTTGCAATAT
LOC_Os03g59650
Target Sequence 
TGTTGCTTAGCTACCATCACATAAGAAACTGACCAATTCTTACTGATACATACTTACCAGGGATCCAGTATCCTCTTTCT
GCAACAGTTTTCAAGAGCATGTGTGATAATGGGACTCATCTGTGGTGCGCTCATGCTGATGCTTATCGCTGGCAACCTTT
GGAGTGNTGGAGTGCCATATATCCATTTTTCTCTTTCCAAATACCAAAAGGCGACTGATGTCAAAGCATCTCGAGAAATA
TATGGTTGACTGCTAACTTGAAATATGCCAGGNTCATGNTTTCACTTGAAATATATNCCATACTGNCTCTTTCACTGGGG
NANNNTGTTCATTTCTGAAGATCATGTTATTCTGGGGAGTGTTGTTCGTTTCTGAAGACGTGAAGATCATGATATTGTTG
TAAATGCAACAGTTTTTCTCATTCGTACACTTGGCCCGGAAAAAAAAATCATGATATTCAGGGTAGAGAATGTTTCTGTT
TGTTGTCTGTTGTAATTTGTAAATACGGATACCTGAGAAAACACACCTCTCACTTGCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis