Browse Element(s) Details


Os.52846.1.S1_at

Description gb:AK069580.1
DB_XREF= gi:32979604
TID=Os.52846.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020A19, full insert sequence.
FL= gb:AK069580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4522011/11Plant invertase/pectin methylesterase inhibitor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein
LOC_Os11g45200NANA11+26849209..26853980retrotransposon protein, putative, unclassified
LOC_Os11g45210OsAffx.31486.1.S1_at11/1111+26855242..26856382expressed protein
LOC_Os11g45220Os.52846.1.S1_at11/1111+26859994..26861496Plant invertase/pectin methylesterase inhibitor family protein, expressed
LOC_Os11g45230OsAffx.21897.5.S1_x_at4/1111+26863725..26866665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240Os.15559.1.A1_at2/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45240OsAffx.7410.1.S1_at1/1111+26866978..26874932retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g45250Os.15559.1.A1_at11/1111+26876724..26881576Ribonucleases P/MRP protein subunit POP1 containing protein, expressed
LOC_Os11g45260OsAffx.19385.1.S1_at11/1111+26883303..26883578hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52846.1.S1_at--1030--1671Chr11:26860557..26860581 (25 bp)
AGCCGGTGATGCAGGCGCTGAACCC
LOC_Os11g45220
Os.52846.1.S1_at--938--9051Chr11:26860548..26860572 (25 bp)
TGCAGGCGCTGAACCCAGTGGTGAA
LOC_Os11g45220
Os.52846.1.S1_at--521--4131Chr11:26860521..26860545 (25 bp)
CGCTGTGCGGCAAGACGGACCACGC
LOC_Os11g45220
Os.52846.1.S1_at--456--1771Chr11:26860494..26860518 (25 bp)
ACCTGTGCGAGTCCTCCATCGGGCA
LOC_Os11g45220
Os.52846.1.S1_at--514--491Chr11:26860435..26860459 (25 bp)
ATCGGCGTCCTCAGGCTCTCCATGA
LOC_Os11g45220
Os.52846.1.S1_at--685--9631Chr11:26860425..26860449 (25 bp)
TCAGGCTCTCCATGAACGCGCTGCG
LOC_Os11g45220
Os.52846.1.S1_at--841--791Chr11:26860321..26860345 (25 bp)
ATGGGCGACTGCCTCCAGATGTACG
LOC_Os11g45220
Os.52846.1.S1_at--182--5731Chr11:26860315..26860339 (25 bp)
GACTGCCTCCAGATGTACGACGACA
LOC_Os11g45220
Os.52846.1.S1_at--725--6971Chr11:26860301..26860325 (25 bp)
GTACGACGACATGAAATCCAACCTG
LOC_Os11g45220
Os.52846.1.S1_at--576--2991Chr11:26860287..26860311 (25 bp)
AATCCAACCTGGACTCGGCGGACGC
LOC_Os11g45220
Os.52846.1.S1_at--984--5631Chr11:26860198..26860222 (25 bp)
GACACCTGCGAGGACGGCTTCAGCG
LOC_Os11g45220
Target Sequence 
AGCCGGTGATGCAGGCGCTGAACCCAGTGGTGAAGGCGCTGTGCGGCAAGACGGACCACGCCGACCTGTGCGAGTCCTCC
ATCGGGCAGCTGCCGCAGCAGCCGCCGGCGCAGCTGGACGACATCGGCGTCCTCAGGCTCTCCATGAACGCGCTGCGCGC
CAAGGTGCAGGAGGCGATCAGCGTGGCGACGAACAGGATGGGGGCGGCCTCCGGGGACGAGGTGTCCAAGGACGCCATGG
GCGACTGCCTCCAGATGTACGACGACATGAAATCCAACCTGGACTCGGCGGACGCGGCGCTCAAGAAGGGGGACAAGGAC
ACGGCGCACACCATGCTCGACTCCGCGCGCACCGACGTCGACACCTGCGAGGACGGCTTCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis