Browse Element(s) Details


Os.52855.1.S1_at

Description gb:AK069605.1
DB_XREF= gi:32979629
TID=Os.52855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full insert sequence.
FL= gb:AK069605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4447011/11Actin-depolymerizing factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44400NANA2+26887255..26889882transposon protein, putative, unclassified
LOC_Os02g44410NANA2+26890174..26893383retrotransposon protein, putative, unclassified
LOC_Os02g44420OsAffx.19826.2.S1_at5/112+26894170..26894981hypothetical protein
LOC_Os02g44430Os.55650.1.A1_at7/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430OsAffx.21756.5.A1_x_at5/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430Os.7307.3.S1_x_at2/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44440NANA2+26901457..26903865retrotransposon protein, putative, unclassified
LOC_Os02g44450NANA2+26907242..26908504hypothetical protein
LOC_Os02g44460NANA2+26911409..26912635retrotransposon protein, putative, unclassified
LOC_Os02g44470Os.52855.1.S1_at11/112+26914037..26916159Actin-depolymerizing factor, putative, expressed
LOC_Os02g44480Os.51892.1.S1_at11/112+26916643..26918340pentatricopeptide, putative
LOC_Os02g44490Os.52714.1.S1_at10/112+26918848..26921304C2 domain containing protein, expressed
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52855.1.S1_at--752--9171Chr02:26915729..26915753 (25 bp)
TGCCGCTACGCGGTATTTGATTTTG
LOC_Os02g44470
Os.52855.1.S1_at--220--9271Chr02:26914533..26914553 (21 bp)
TCCTGGGCTCCTGATACATCAAGGG
LOC_Os02g44470
Os.52855.1.S1_at--423--631Chr02:26914490..26914514 (25 bp)
ATGCTAGCTCCAAGGATCGGTTCAA
LOC_Os02g44470
Os.52855.1.S1_at--724--7871Chr02:26914365..26914389 (25 bp)
GGTTACTGCAATCCCCAGGAGCGAA
LOC_Os02g44470
Os.52855.1.S1_at--960--4311Chr02:26914281..26914305 (25 bp)
CCATTTTCTTGTCATTCTTTTCCTG
LOC_Os02g44470
Os.52855.1.S1_at--683--5731Chr02:26914229..26914253 (25 bp)
GACTGTATTGCCGTTTTTCTCTTTC
LOC_Os02g44470
Os.52855.1.S1_at--1145--7271Chr02:26914193..26914217 (25 bp)
GTGCCATAGTCGTGTTACTGCTGTA
LOC_Os02g44470
Os.52855.1.S1_at--1133--2091Chr02:26914161..26914185 (25 bp)
ACATGCTTTCGTTTTGAGACTTGGA
LOC_Os02g44470
Os.52855.1.S1_at--1033--6471Chr02:26914138..26914162 (25 bp)
GATACTTTTCTCATGAGTCCTTCCA
LOC_Os02g44470
Os.52855.1.S1_at--684--2951Chr02:26914089..26914113 (25 bp)
AAGGCCGTGGCGTCATATGGTGCCA
LOC_Os02g44470
Os.52855.1.S1_at--1154--5411Chr02:26914059..26914083 (25 bp)
GAAGCCTGTTGTACGGTGTACCGTA
LOC_Os02g44470
Target Sequence 
TGCCGCTACGCGGTATTTGATTTTGACTTTGTCACTGATGAAAACTGCCAGAAGAGCAAGATATTCTTCATCTCCTGGGC
TCCTGATACATCAAGGGTGAGGAGCAAGATGCTGTATGCTAGCTCCAAGGATCGGTTCAAGAGGGAGCTGGACGGCATCC
AGGTGGAGCTGCAGGCCACTGACCCGAGTGAGATGAGCATGGACATCGTCAAGTCGCGAGCCCTCTGAGAAACACAGGCC
GGTTACTGCAATCCCCAGGAGCGAAAAGGCGTTAATTTGCTACAGCTCCTCTGCCTACAATTCCTTCCCGTTGGCGATGG
TCAACCATTTTCTTGTCATTCTTTTCCTGGAAGCAAATGTGTTGCATTCTGTATGAGACTGTATTGCCGTTTTTCTCTTT
CCCCCGTCGTTGGTGCCATAGTCGTGTTACTGCTGTAAACTAGAACATGCTTTCGTTTTGAGACTTGGATACTTTTCTCA
TGAGTCCTTCCACCATGCTGGTATGCTAAATCAGTAAAGGCCGTGGCGTCATATGGTGCCAGTTGTGAAGCCTGTTGTAC
GGTGTACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis