Browse Element(s) Details


Os.52896.1.S1_at

Description gb:AK069775.1
DB_XREF= gi:32979799
TID=Os.52896.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028H13, full insert sequence.
FL= gb:AK069775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g036008/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03540Os.4606.1.S1_at11/115+1475961..1477672expressed protein
LOC_Os05g03550Os.10447.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S2_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03550Os.53062.1.S1_at11/115+1479094..1485865Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g03560NANA5+1489075..1489401hypothetical protein
LOC_Os05g03574Os.27032.1.S2_at11/115+1493598..1498743expressed protein
LOC_Os05g03574Os.27032.1.S1_at11/115+1493598..1498743expressed protein
LOC_Os05g03590NANA5+1500101..1500665expressed protein
LOC_Os05g03600Os.52896.1.S1_at8/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03600OsAffx.20135.1.S1_x_at1/115+1501873..1507476retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g03610Os.2243.1.S1_a_at11/115+1513750..1519597phospholipase C, putative, expressed
LOC_Os05g03620Os.17036.1.S1_x_at11/115+1525459..1528042protein kinase family protein, putative, expressed
LOC_Os05g03630Os.6218.1.S1_at11/115+1531649..1535273DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52896.1.S1_at--435--2376Chr09:9830639..9830663 (25 bp)
AAACCTTACACGATGTATCTAGTAG
NONE
Os.52896.1.S1_at--29--6977Chr09:9830663..9830687 (25 bp)
GTAGCTAGTTTTACGTTCCTTTCTG
NONE
Os.52896.1.S1_at--313--1895Chr09:9830675..9830699 (25 bp)
ACGTTCCTTTCTGTTGCTGCATGCA
NONE
Os.52896.1.S1_at--314--4776Chr09:9830690..9830714 (25 bp)
GCTGCATGCATGTTAGTTTTTCTGT
NONE
Os.52896.1.S1_at--746--10317Chr09:9830708..9830732 (25 bp)
TTTCTGTTGTTGCATGCGCGAGCTC
NONE
Os.52896.1.S1_at--1137--594Chr09:9830743..9830767 (25 bp)
ATGCCGTGCACGTAGTGGCTGTCAA
NONE
Os.52896.1.S1_at--1115--10074Chr09:9830755..9830779 (25 bp)
TAGTGGCTGTCAACGAGATTAACTC
NONE
Os.52896.1.S1_at--904--1254Chr09:9830770..9830794 (25 bp)
AGATTAACTCGCGACTGGCCTGGAC
NONE
Os.52896.1.S1_at--88--5617Chr09:9830792..9830816 (25 bp)
GACAACGGGACGTGAACGCGTCTCT
NONE
Os.52896.1.S1_at--307--5437Chr09:9830841..9830865 (25 bp)
GAACCGGGACGTGGGATCGAATCCT
NONE
Os.52896.1.S1_at--817--3997Chr09:9830850..9830874 (25 bp)
CGTGGGATCGAATCCTAAGTCTGTT
NONE
Target Sequence 
AAACCTTACACGATGTATCTAGTAGTAGCTAGTTTTACGTTCCTTTCTGTTGCTGCATGCATGTTAGTTTTTCTGTTGTT
GCATGCGCGAGCTCCGGGTTGTGGATGCCGTGCACGTAGTGGCTGTCAACGAGATTAACTCGCGACTGGCCTGGACAACG
GGACGTGAACGCGTCTCTCGGATCGCGGGGATGGACGCGAAAGAACCGGGACGTGGGATCGAATCCTAAGTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis