Browse Element(s) Details


Os.52900.1.S1_at

Description gb:AK069795.1
DB_XREF= gi:32979819
TID=Os.52900.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027F21, full insert sequence.
FL= gb:AK069795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1746010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed
LOC_Os07g17470OsAffx.28493.1.S1_at11/117+10310478..10310873hypothetical protein
LOC_Os07g17480Os.46012.2.S1_x_at7/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.27088.1.A1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17480Os.46012.3.S1_x_at3/117+10317992..10322396retrotransposon protein, putative, unclassified
LOC_Os07g17490OsAffx.28494.2.S1_at10/117+10325162..10327479hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52900.1.S1_at--192--2051Chr07:10304627..10304651 (25 bp)
ACTTTGCCACATTCTTCATAAGGAA
LOC_Os07g17460
Os.52900.1.S1_at--261--9871Chr07:10304575..10304599 (25 bp)
TACAGGTGGTCGTAGCAATGGTAAC
LOC_Os07g17460
Os.52900.1.S1_at--1116--1831Chr07:10304552..10304576 (25 bp)
ACGCATATTTTATTGCACGACAGCA
LOC_Os07g17460
Os.52900.1.S1_at--896--5271Chr07:10304403..10304427 (25 bp)
GAATGTACCTGTTGAGACTGATGAG
LOC_Os07g17460
Os.52900.1.S1_at--92--8051Chr07:10304337..10304361 (25 bp)
GGAGAGTTGCTCGTTTTGAATTTAA
LOC_Os07g17460
Os.52900.1.S1_at--1019--1391Chr07:10304313..10304337 (25 bp)
AGACTGATGGATACTGTCACTGAGC
LOC_Os07g17460
Os.52900.1.S1_at--233--1271Chr07:10304263..10304287 (25 bp)
AGATTTGCCTTAATTGCTGTACATA
LOC_Os07g17460
Os.52900.1.S1_at--783--4731Chr07:10304248..10304272 (25 bp)
GCTGTACATACCTTTGGATGTTGTT
LOC_Os07g17460
Os.52900.1.S1_at--755--5891Chr07:10304203..10304227 (25 bp)
GAGCTGTTGTTTCATTCAGATACCT
LOC_Os07g17460
Os.52900.1.S1_at--626--5031Chr07:10304146..10304170 (25 bp)
GCAGTTGTTTCGCTCAGATACTACT
LOC_Os07g17460
Os.52900.1.S1_at--37--7091Chr07:10304067..10304091 (25 bp)
GTCAATGGCAGTTTAGCTGTCATGC
NONE
Target Sequence 
ACTTTGCCACATTCTTCATAAGGAATGCGACTAAGCTTGAGAATATGATATTTACAGGTGGTCGTAGCAATGGTAACGCA
TATTTTATTGCACGACAGCAAAAGCTGCTGGAGTTTGAGAAAAGGGCTTCAAAAACTGCTCACTTTCATTTTACAACCAA
GAAATGCTATTATGATTGGGTGCATATCAAGGATGTCCATGATTTGTCTATTGCTGATCCTTTTGAATGTACCTGTTGAG
ACTGATGAGTAGAATTATTGTAAGATGGTTCAACTGGGAAAGAGGACTTTGGAGAGTTGCTCGTTTTGAATTTAAGACTG
ATGGATACTGTCACTGAGCTGAAAATCTATATTGATCATGTTGTAGATTTGCCTTAATTGCTGTACATACCTTTGGATGT
TGTTGAAACAAGGTTTGATGTATTGAGCTGTTGTTTCATTCAGATACCTTTGAATATTGTTGAAAAAGATTGATGTATTG
AGCAGTTGTTTCGCTCAGATACTACTTTTTTTATTTTTTTACCAATTTCTGTTGTAATAATACTTGTTAAAAAATTGTTG
TCAATGGCAGTTTAGCTGTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis