Browse Element(s) Details


Os.52902.1.S1_at

Description gb:AK069813.1
DB_XREF= gi:32979837
TID=Os.52902.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030F23, full insert sequence.
FL= gb:AK069813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4000011/11LOB domain protein 37, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39960Os.55561.1.S1_at11/117+23971763..23975024Zinc finger, C2H2 type family protein
LOC_Os07g39970Os.50628.1.S1_at11/117+23978845..23979556Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39980Os.23164.1.S1_a_at11/117+23983584..23988259expressed protein
LOC_Os07g39990Os.52448.2.S1_at11/117+23989712..23990632expressed protein
LOC_Os07g40000Os.52902.1.S1_at11/117+23994820..23995870LOB domain protein 37, putative, expressed
LOC_Os07g40010Os.47086.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40010OsAffx.485.1.S1_at1/117+23997752..23999295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g40020OsAffx.28833.1.S1_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40020OsAffx.28833.1.S1_x_at11/117+24012923..24014484scarecrow transcription factor family protein, putative, expressed
LOC_Os07g40030Os.6835.1.S1_at11/117+24018685..24023410transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52902.1.S1_at--485--791Chr07:23995350..23995374 (25 bp)
ATGGGCGGGTGCTCCACGTTCTCGA
LOC_Os07g40000
Os.52902.1.S1_at--921--4491Chr07:23995544..23995568 (25 bp)
GCCGTCGATGAACTCCGAGGGATCC
LOC_Os07g40000
Os.52902.1.S1_at--1013--5231Chr07:23995619..23995643 (25 bp)
GAATCTTTTTGTCTAGGCTAGCTAG
LOC_Os07g40000
Os.52902.1.S1_at--71--1771Chr07:23995651..23995675 (25 bp)
ACCTGCTCAATTCTCATATGCTTTC
LOC_Os07g40000
Os.52902.1.S1_at--915--10311Chr07:23995672..23995696 (25 bp)
TTTCTTTGCTGCATCCCGGCGAACT
LOC_Os07g40000
Os.52902.1.S1_at--837--3851Chr07:23995688..23995712 (25 bp)
CGGCGAACTCTTTGGTAGCCTCTCG
LOC_Os07g40000
Os.52902.1.S1_at--916--6151Chr07:23995718..23995742 (25 bp)
GAGGTATCCCTTAGCCATTTTTTGG
LOC_Os07g40000
Os.52902.1.S1_at--476--9031Chr07:23995767..23995791 (25 bp)
TGCACTGCTTCTACTTGACTCTTTA
LOC_Os07g40000
Os.52902.1.S1_at--702--5711Chr07:23995783..23995807 (25 bp)
GACTCTTTACAGTACCTTATGTTTT
LOC_Os07g40000
Os.52902.1.S1_at--489--10771Chr07:23995822..23995846 (25 bp)
TTGTTAGCATCAAAACGTCGAATAA
LOC_Os07g40000
Os.52902.1.S1_at--838--2351Chr07:23995846..23995870 (25 bp)
AAAGCGAACAGATTAACCTCGCGTC
LOC_Os07g40000
Target Sequence 
ATGGGCGGGTGCTCCACGTTCTCGACGGCGAAGCGGTCGACGACGACGACGACGACCAAGAACCCNNGTACTCCGCATGA
CGCCGCCGCCGCGGCGCCCCAGCCGGNACCGTCGTGCGACCTCNGNCTGTGGCTCANCCCCGGCTCCCCGCCGGNGCCCG
GGGACCGGCGATCCGGCGGCAGGNGGGCCGACACGCCGTCGATGAACTCCGAGGGATCCGTCACGACGTGCGGCGTCGTC
GGCGACGGCGAGAGGGAGCCCGAGCTGCTGAATCTTTTTGTCTAGGCTAGCTAGCTAATTAACCTGCTCAATTCTCATAT
GCTTTCTTTGCTGCATCCCGGCGAACTCTTTGGTAGCCTCTCGCCGGCGAGGTATCCCTTAGCCATTTTTTGGCCGTGTA
AAAGTCGACGGTGCGCGTGCACTGCTTCTACTTGACTCTTTACAGTACCTTATGTTTTTTTCTCCCCCTACTTTGTTAGC
ATCAAAACGTCGAATAAAAGCGAACAGATTAACCTCGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis