Browse Element(s) Details


Os.5295.1.S1_at

Description gb:CR285147
DB_XREF= gi:44671713
DB_XREF=CR285147
CLONE=p471g04p3
TID=Os.5295.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.5295 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186910.1 (A.thaliana) putative stearoyl-acyl carrier protein desaturase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1001011/11Acyl-desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein
LOC_Os08g10000OsAffx.29127.1.S1_at11/118+5774462..5774857hypothetical protein
LOC_Os08g10010Os.5295.1.S1_at11/118+5781253..5782786Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g10020Os.7962.1.S1_a_at10/118+5800116..5802114Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os08g10030Os.15367.1.S1_at11/118+5804771..5809684KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5295.1.S1_at--380--2951Chr08:5781464..5781488 (25 bp)
AAGGCCCATGACAGAGCGGCCCAGA
LOC_Os08g10010
Os.5295.1.S1_at--234--2151Chr08:5781454..5781478 (25 bp)
ACAGAGCGGCCCAGATGAGGAAAAG
LOC_Os08g10010
Os.5295.1.S1_at--658--8431Chr08:5781423..5781447 (25 bp)
GGCCATTCCATTTAGCTGGATCTTT
LOC_Os08g10010
Os.5295.1.S1_at--96--3911Chr08:5781408..5781432 (25 bp)
CTGGATCTTTGATAAGCCCGTGGAT
LOC_Os08g10010
Os.5295.1.S1_at--15--6471Chr08:5781398..5781422 (25 bp)
GATAAGCCCGTGGATCTCATGCTGC
LOC_Os08g10010
Os.5295.1.S1_at--806--3511Chr08:5781381..5781405 (25 bp)
CATGCTGCCCTAATTAATTACTTTG
LOC_Os08g10010
Os.5295.1.S1_at--339--2031Chr08:5781362..5781386 (25 bp)
ACTTTGTTTTGTGCTAATTATATGG
LOC_Os08g10010
Os.5295.1.S1_at--345--10111Chr08:5781342..5781366 (25 bp)
TATGGTGGGTATTGAGCTTCTGGTT
LOC_Os08g10010
Os.5295.1.S1_at--1100--51Chr08:5781332..5781356 (25 bp)
ATTGAGCTTCTGGTTGTAGTGGTTT
LOC_Os08g10010
Os.5295.1.S1_at--602--7471Chr08:5781304..5781328 (25 bp)
GTGTGTTACCCAAAGTTGTGTTCAT
LOC_Os08g10010
Os.5295.1.S1_at--251--7431Chr08:5781287..5781311 (25 bp)
GTGTTCATTGTATTTATCTACCTCA
LOC_Os08g10010
Target Sequence 
AAGGCCCATGACAGAGCGGCCCAGATGAGGAAAAGGCCCNCGGCCATTCCATTTAGCTGGATCTTTGATAAGCCCGTGGA
TCTCATGCTGCCCTAATTAATTACTTTGTTTTGTGCTAATTATATGGTGGGTATTGAGCTTCTGGTTGTAGTGGTTTGGT
GTGTGTTACCCAAAGTTGTGTTCATTGTATTTATCTACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis