Browse Element(s) Details


Os.52951.1.S1_at

Description gb:AK070089.1
DB_XREF= gi:32980113
TID=Os.52951.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041J01, full insert sequence.
FL= gb:AK070089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g040302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52951.1.S1_at--1025--7972Chr04:1968810..1968834 (25 bp)
GGATGCTATCCTTGATGTTCCTACT
NONE
Os.52951.1.S1_at--480--9012Chr04:1968904..1968928 (25 bp)
TGCAAGGCATGCAAGTCCCAACCAA
NONE
Os.52951.1.S1_at--619--8551Chr04:1856794..1856818 (25 bp)
TGGTCCGGAAATACCTACCTTGGAT
NONE
Os.52951.1.S1_at--53--10351Chr04:1856827..1856851 (25 bp)
TTTACTCTATTCCTCATTGACCATG
NONE
Os.52951.1.S1_at--1053--9771Chr04:1856859..1856883 (25 bp)
TAAGTACTGCAGTTGGACCGAGAGA
NONE
Os.52951.1.S1_at--248--11Chr04:1856928..1856952 (25 bp)
ATAGGTTACCTGATTGTTCCCCACT
NONE
Os.52951.1.S1_at--1099--8191Chr04:1856965..1856989 (25 bp)
GGAAGGTGGATCCATCAATCACTAA
NONE
Os.52951.1.S1_at--683--10091Chr04:1857003..1857027 (25 bp)
TAGGACTTGCTAGCGAGGCAGCGTT
NONE
Os.52951.1.S1_at--756--931Chr04:1857018..1857042 (25 bp)
AGGCAGCGTTTTGGCACTCAAGTTT
NONE
Os.52951.1.S1_at--92--10511Chr04:1857087..1857111 (25 bp)
TTAATTCAGTGCTTCTTCCTGGTTG
NONE
Os.52951.1.S1_at--415--3251Chr04:1857114..1857138 (25 bp)
CAAGCCTTCTGGTTGGCATGTGGAA
NONE
Target Sequence 
GGATGCTATCCTTGATGTTCCTACTGACGATGGGAAACACCAAACAATTAGGGTAACAATTCCAGACAACACAGCACCTC
CACCAGCAATTGATTGCAAGGCATGCAAGTCCCAACCAACGCTGACGCCACCACCACCTCCATCTCCGTCACCTCCACAG
AAGTGAATTCGTCTGGAGAAATTCTTTTGGTCCGGAAATACCTACCTTGGATTAGTCTTTTTTACTCTATTCCTCATTGA
CCATGAAAGAAATAAGTACTGCAGTTGGACCGAGAGAACAGCAGATTCTTTACTTTTGTTTTTGCAATGATACAACATAG
AATAGGTTACCTGATTGTTCCCCACTCAGCAATACTTTGGAAGGTGGATCCATCAATCACTAAACTAGATTTGCTTTAGG
ACTTGCTAGCGAGGCAGCGTTTTGGCACTCAAGTTTTTTAGGGTTTATACTACATGATACTCCATGAGAATCTAGGTTGG
TTAATTCAGTGCTTCTTCCTGGTTGTCCAAGCCTTCTGGTTGGCATGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis