Browse Element(s) Details


Os.52955.1.A1_at

Description gb:AK070105.1
DB_XREF= gi:32980129
TID=Os.52955.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043J24, full insert sequence.
FL= gb:AK070105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4222011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42200NANA12+26139379..26145397cation/hydrogen exchanger, putative, expressed
LOC_Os12g42210Os.52551.1.S1_at6/1112+26146557..26151053Protease Do-like 5, chloroplast precursor, putative, expressed
LOC_Os12g42220Os.52955.1.A1_at11/1112+26160950..26162375expressed protein
LOC_Os12g42230Os.15571.1.S1_at10/1112+26166584..26169873Pyruvate dehydrogenase E1 component beta subunit, putative, expressed
LOC_Os12g42240OsAffx.20087.1.S1_at11/1112+26170159..26170515hypothetical protein
LOC_Os12g42250OsAffx.7862.1.S1_s_at11/1112+26177205..26178290expressed protein
LOC_Os12g42260Os.47335.2.S1_at10/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed
LOC_Os12g42260Os.47335.1.S1_at9/1112+26180383..26188203Initiation factor 2 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52955.1.A1_at--233--1611Chr12:26161447..26161471 (25 bp)
AGCTGCAGCTGCTTGACATATGCAA
LOC_Os12g42220
Os.52955.1.A1_at--696--251Chr12:26161430..26161454 (25 bp)
ATATGCAAGAATCCGCCATGGCCAT
LOC_Os12g42220
Os.52955.1.A1_at--157--4431Chr12:26161416..26161440 (25 bp)
GCCATGGCCATGTACAAAATCGATC
LOC_Os12g42220
Os.52955.1.A1_at--602--3051Chr12:26161399..26161423 (25 bp)
AATCGATCAAGTTCAAGCTCAAAGC
LOC_Os12g42220
Os.52955.1.A1_at--116--9711Chr12:26161374..26161398 (25 bp)
TCAAAGGCTCTAGCTAGCTCCATGT
LOC_Os12g42220
Os.52955.1.A1_at--556--1571Chr12:26161363..26161387 (25 bp)
AGCTAGCTCCATGTCATGTCCATGT
LOC_Os12g42220
Os.52955.1.A1_at--470--7271Chr12:26161346..26161370 (25 bp)
GTCCATGTCCATGTAGATGTTGATG
LOC_Os12g42220
Os.52955.1.A1_at--354--4871Chr12:26161277..26161301 (25 bp)
GCTAGGCATAAGCTCCATGTCACAG
LOC_Os12g42220
Os.52955.1.A1_at--1121--3093Chr03:3818314..3818336 (22 bp)
AATTCCTACGTTTCAAAGAGCCAGC
NONE
Os.52955.1.A1_at--247--2771Chr12:26161123..26161147 (25 bp)
AAGAGCCAGCAGTAGCTATAGCTAA
LOC_Os12g42220
Os.52955.1.A1_at--299--8591Chr12:26161061..26161085 (25 bp)
TGGTAGTCTTCTGCATCCATAGATG
LOC_Os12g42220
Target Sequence 
AGCTGCAGCTGCTTGACATATGCAAGAATCCGCCATGGCCATGTACAAAATCGATCAAGTTCAAGCTCAAAGCTCAAAGG
CTCTAGCTAGCTCCATGTCATGTCCATGTCCATGTAGATGTTGATGCGAGTTTGTTAATTAGGTTGAGCTTTTGGACATG
GAGCTAGCTAGCTAGGCATAAGCTCCATGTCACAGAAAATAGGTCGGTTTTTTAAAAACTCCCACAAAATTCCTNTAGGC
CTATTCAGATCGGAGGAATTTTGCAGGAGTTTTTAAGAAACCAAGNTATTTTCTGTGAAAATTTTGTAAAATTCCTACGT
TTCAAAGAGCCAGCAGTAGCTATAGCTAAGTAGTTANCNAGTAGCTTCTTCTTGCTTGGTNCCTNTTGGTAGTCTTCTGC
ATCCATAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52955.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis