Browse Element(s) Details


Os.52959.1.S1_at

Description gb:AK070117.1
DB_XREF= gi:32980141
TID=Os.52959.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040I21, full insert sequence.
FL= gb:AK070117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3980011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39770OsAffx.22944.2.S1_s_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39770OsAffx.22944.4.S1_at11/1112+24524789..24525499hypothetical protein
LOC_Os12g39780OsAffx.32100.2.S1_s_at11/1112+24526079..24527905expressed protein
LOC_Os12g39790OsAffx.20038.1.S1_at10/1112+24535667..24539893hypothetical protein
LOC_Os12g39800Os.52959.1.S1_at11/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.19542.3.S1_x_at10/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800Os.51841.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.9949.1.S1_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39800OsAffx.21754.1.S1_x_at1/1112+24545397..24557553retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39810NANA12+24571759..24572629hypothetical protein
LOC_Os12g39820NANA12+24575401..24575826retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52959.1.S1_at--975--10792Chr06:22183601..22183625 (25 bp)
TTGTTCTACTGCAGGAATGCTCTGA
NONE
Os.52959.1.S1_at--150--6872Chr06:22183672..22183696 (25 bp)
GTTTGTATATTTCTATGCCTCATTG
NONE
Os.52959.1.S1_at--967--612Chr06:22183699..22183723 (25 bp)
ATGCTTAAATATGACACCCCTCACT
NONE
Os.52959.1.S1_at--401--1732Chr06:22183714..22183738 (25 bp)
ACCCCTCACTTATAACTGTTGGCTA
NONE
Os.52959.1.S1_at--297--10352Chr06:22183850..22183874 (25 bp)
TTTTTTGCAAATATCCAGGTGGCCA
NONE
Os.52959.1.S1_at--63--4352Chr06:22183872..22183896 (25 bp)
CCATGGGATGCCTCCCTAGATGATG
NONE
Os.52959.1.S1_at--184--5052Chr06:22183942..22183966 (25 bp)
GCAGCACTTTGTCAGCTTGATTCGA
NONE
Os.52959.1.S1_at--362--8832Chr06:22183959..22183983 (25 bp)
TGATTCGATATGTGGCGCCGGAGTC
NONE
Os.52959.1.S1_at--702--2952Chr06:22183979..22184003 (25 bp)
GAGTCGTCCTACTCGCGGGATTCGG
NONE
Os.52959.1.S1_at--13--7932Chr06:22183996..22184020 (25 bp)
GGATTCGGGCAAGGGTCGACCCACA
NONE
Os.52959.1.S1_at--497--2092Chr06:22184018..22184042 (25 bp)
ACATCGTTAGGCCTGATCTACATTG
NONE
Target Sequence 
TTGTTCTACTGCAGGAATGCTCTGAATAAATTTTGTAGACTTGATATTTGGATTAAACCCGTTATTTTCAAGTTTGTATA
TTTCTATGCCTCATTGATATGCTTAAATATGACACCCCTCACTTATAACTGTTGGCTAACAATAGGCATAATAAAGTGAG
GTTCTTATGAAGCATTTTATTTCTTCTTCAGATAATTGTATCTCACTTAGAGTCATTTATGAGTGTAAATCACTTAGATG
ATTTAATCTTTTTTTGCAAATATCCAGGTGGCCATGGGATGCCTCCCTAGATGATGGCCGTGGGTGATGGATATCTGTTG
ATGGGGAGGCCTAGAGAATCTGCAGCACTTTGTCAGCTTGATTCGATATGTGGCGCCGGAGTCGTCCTACTCGCGGGATT
CGGGCAAGGGTCGACCCACATCGTTAGGCCTGATCTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis