Browse Element(s) Details


Os.52960.1.S1_x_at

Description gb:AK072316.1
DB_XREF= gi:32982339
TID=Os.52960.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025A17, full insert sequence.
FL= gb:AK072316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2586911/11expressed protein
LOC_Os03g258201/11amino acid permease family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25830NANA3+14761877..14762146hypothetical protein
LOC_Os03g25840NANA3+14763522..14764514amino acid permease family protein, putative, expressed
LOC_Os03g25850OsAffx.13036.1.S1_at11/113+14767021..14768718expressed protein
LOC_Os03g25850Os.54494.1.S1_at1/113+14767021..14768718expressed protein
LOC_Os03g25869Os.52960.3.S1_at11/113+14768978..14776830expressed protein
LOC_Os03g25869Os.52960.1.S1_x_at11/113+14768978..14776830expressed protein
LOC_Os03g25869OsAffx.13037.1.S1_x_at1/113+14768978..14776830expressed protein
LOC_Os03g25890NANA3+14785418..14789460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g25900NANA3+14799965..14800786retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52960.1.S1_x_at--635--3471Chr03:14769266..14769290 (25 bp)
CAGGTCCAGGAAGTGGCTCAGGTTC
LOC_Os03g25869
Os.52960.1.S1_x_at--727--1091Chr03:14769255..14769279 (25 bp)
AGTGGCTCAGGTTCAACACCGCGGT
LOC_Os03g25869
Os.52960.1.S1_x_at--263--4091Chr03:14769224..14769248 (25 bp)
CGACCATCGTCTGCAACTACAAGAT
LOC_Os03g25869
Os.52960.1.S1_x_at--415--9271Chr03:14769191..14769215 (25 bp)
TCCTCCTGCTGGTAGAGTCTGAACT
LOC_Os03g25869
Os.52960.1.S1_x_at--1015--6093Chr03:14769177..14769201 (25 bp)
GAGTCTGAACTCTGAACCCGTTTTG
LOC_Os03g25869
Os.52960.1.S1_x_at--826--1791Chr03:14769162..14769186 (25 bp)
ACCCGTTTTGGCAGATTTCGTCTTG
LOC_Os03g25869
Os.52960.1.S1_x_at--801--5391Chr03:14769043..14769067 (25 bp)
GAAGCTCTAAAGTTGGCGTTTTCAT
LOC_Os03g25869
Os.52960.1.S1_x_at--1107--8351Chr03:14769029..14769053 (25 bp)
GGCGTTTTCATATTTGTTCCTCTAA
LOC_Os03g25869
Os.52960.1.S1_x_at--990--6691Chr03:14769014..14769038 (25 bp)
GTTCCTCTAATTAATCACCGTGTAC
LOC_Os03g25869
Os.52960.1.S1_x_at--471--4251Chr03:14768997..14769021 (25 bp)
CCGTGTACGATTGTGGTTCATTATC
LOC_Os03g25869
Os.52960.1.S1_x_at--213--7892Chr03:14768983..14769007 (25 bp)
GGTTCATTATCAGAGACGCGGTTTA
LOC_Os03g25869
Target Sequence 
CAGGTCCAGGAAGTGGCTCAGGTTCAACACCGCGGTTGCCGCCGACCATCGTCTGCAACTACAAGATGCTCCTCCTCCTC
CTGCTGGTAGAGTCTGAACTCTGAACCCGTTTTGGCAGATTTCGTCTTGCGAAAAGATGAAACACGGTAAGAAACTCGAA
ATATTTGCTAGTAGAAGACTAATTACAAGCTATACTAGTACAAGACTAATTACATGGTTGGATGAAGCTCTAAAGTTGGC
GTTTTCATATTTGTTCCTCTAATTAATCACCGTGTACGATTGTGGTTCATTATCAGAGACGCGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52960.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis