Browse Element(s) Details


Os.49475.1.S1_at

Description gb:AK120709.1
DB_XREF= gi:37990332
TID=Os.49475.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001F15, full insert sequence.
FL= gb:AK120709.1 gb:AK110542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2579011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed
LOC_Os03g25770Os.8809.1.S1_s_at11/113+14730174..14733706RNA recognition motif family protein, expressed
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25830NANA3+14761877..14762146hypothetical protein
LOC_Os03g25840NANA3+14763522..14764514amino acid permease family protein, putative, expressed
LOC_Os03g25850OsAffx.13036.1.S1_at11/113+14767021..14768718expressed protein
LOC_Os03g25850Os.54494.1.S1_at1/113+14767021..14768718expressed protein
LOC_Os03g25869Os.52960.3.S1_at11/113+14768978..14776830expressed protein
LOC_Os03g25869Os.52960.1.S1_x_at11/113+14768978..14776830expressed protein
LOC_Os03g25869OsAffx.13037.1.S1_x_at1/113+14768978..14776830expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49475.1.S1_at--1033--3871Chr03:14746289..14746313 (25 bp)
CTGTCCGTCGATCTCATGTGAAGTT
LOC_Os03g25790
Os.49475.1.S1_at--411--7351Chr03:14746306..14746330 (25 bp)
GTGAAGTTCGTTTCTATTTGTGTAA
LOC_Os03g25790
Os.49475.1.S1_at--734--611Chr03:14746342..14746366 (25 bp)
ATGCGTTGTGATGTTGCTCTGAGAA
LOC_Os03g25790
Os.49475.1.S1_at--63--2251Chr03:14746365..14746389 (25 bp)
AAATTGCTGGTCTCTGTAGGCGGCG
LOC_Os03g25790
Os.49475.1.S1_at--146--8351Chr03:14746383..14746407 (25 bp)
GGCGGCGGATTGAAATTATGCATAC
LOC_Os03g25790
Os.49475.1.S1_at--1073--6871Chr03:14746453..14746477 (25 bp)
GTATATATACTTGATCAGCATGGAC
LOC_Os03g25790
Os.49475.1.S1_at--877--2251Chr03:14746489..14746513 (25 bp)
AAATATGTGCTAGTCAGTCGCTGAC
LOC_Os03g25790
Os.49475.1.S1_at--170--1151Chr03:14746504..14746528 (25 bp)
AGTCGCTGACAATTTCTGTTCTTCG
LOC_Os03g25790
Os.49475.1.S1_at--557--9471Chr03:14746518..14746542 (25 bp)
TCTGTTCTTCGACCTGTCAGTTAAT
LOC_Os03g25790
Os.49475.1.S1_at--923--331Chr03:14746547..14746571 (25 bp)
ATACATGTACATGCCACTAGCCTCA
LOC_Os03g25790
Os.49475.1.S1_at--238--2031Chr03:14746562..14746586 (25 bp)
ACTAGCCTCACGCATGGTTGAGTTG
LOC_Os03g25790
Target Sequence 
CTGTCCGTCGATCTCATGTGAAGTTCGTTTCTATTTGTGTAAATTTGGGAATCATGCGTTGTGATGTTGCTCTGAGAAAT
TGCTGGTCTCTGTAGGCGGCGGATTGAAATTATGCATACGAAAAATTAGGAGTTTATATATATATATGTAATTATGCATG
TATAGTATATATACTTGATCAGCATGGACATTATCTAAAAAAATATGTGCTAGTCAGTCGCTGACAATTTCTGTTCTTCG
ACCTGTCAGTTAATGGTTATACATGTACATGCCACTAGCCTCACGCATGGTTGAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis