Browse Element(s) Details


OsAffx.25227.1.S1_at

Description tigr:9631.m02524
TID=OsAffx.25227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2576011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed
LOC_Os03g25770Os.8809.1.S1_s_at11/113+14730174..14733706RNA recognition motif family protein, expressed
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25227.1.S1_at--573--7951Chr03:14718454..14718478 (25 bp)
GGATCAGTTCAGAGAGCTACCCCAA
LOC_Os03g25760
OsAffx.25227.1.S1_at--669--1431Chr03:14718430..14718454 (25 bp)
AGAACACTGCCACTGACAACTCTGA
LOC_Os03g25760
OsAffx.25227.1.S1_at--250--9472Chr03:26319213..26319237 (25 bp)
TCTGAAGACCAAGCCGCTGAAGCTG
NONE
OsAffx.25227.1.S1_at--1084--3732Chr03:14718394..14718418 (25 bp)
CTGAAGCTGAAGAAACCGGCAATTC
LOC_Os03g25760
OsAffx.25227.1.S1_at--1016--91Chr03:14718373..14718397 (25 bp)
ATTCCCAGATGCCTCGAGTCTCTGA
LOC_Os03g25760
OsAffx.25227.1.S1_at--1084--6091Chr03:14718358..14718382 (25 bp)
GAGTCTCTGACGAACCAACCTGTGC
LOC_Os03g25760
OsAffx.25227.1.S1_at--698--3251Chr03:14718343..14718367 (25 bp)
CAACCTGTGCAGAGATCGACGGCTG
LOC_Os03g25760
OsAffx.25227.1.S1_at--273--6951Chr03:14718293..14718317 (25 bp)
GTAGATTCGTCGTCAGCTGTTGCTG
LOC_Os03g25760
OsAffx.25227.1.S1_at--80--3871Chr03:14718262..14718286 (25 bp)
CTGAGAACACTGAAGCCGAGGAGGA
LOC_Os03g25760
OsAffx.25227.1.S1_at--1154--8872Chr03:26318977..26319001 (25 bp)
TGAGGTCGTATCAGCTCGGGAAGCA
NONE
OsAffx.25227.1.S1_at--263--8191Chr03:14718142..14718166 (25 bp)
GGAAGCAGCTCTCCTTCCGGTGGAC
LOC_Os03g25760
Target Sequence 
GGATCAGTTCAGAGAGCTACCCCAAGAACACTGCCACTGACAACTCTGAAGACCAAGCCGCTGAAGCTGAAGAAACCGGC
AATTCCCAGATGCCTCGAGTCTCTGACGAACCAACCTGTGCAGAGATCGACGGCTGCGACGAACCGGCGGCGACGAGGAG
GGTAGATTCGTCGTCAGCTGTTGCTGCTGCTGCTGAGAACACTGAAGCCGAGGAGGAGGATCAAGAAGGCGGCGGCGAGC
AGGCGCCGGTGCCGAGGGAGAAGATCCTGGAGAGGATCAACTCCAAGAAGGGGATGAGGTCGTATCAGCTCGGGAAGCAG
CTCTCCTTCCGGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis