Browse Element(s) Details


OsAffx.29692.1.S1_at

Description tigr:9631.m02519
TID=OsAffx.29692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2571011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29692.1.S1_at--479--3251Chr03:14697090..14697114 (25 bp)
CAACCTGTGGCCGGCGTTGAAGCAG
LOC_Os03g25710
OsAffx.29692.1.S1_at--265--2171Chr03:14697164..14697188 (25 bp)
ACACCCGCGGCCAGGTGAACGCGTA
LOC_Os03g25710
OsAffx.29692.1.S1_at--100--4271Chr03:14697242..14697266 (25 bp)
CCGGCAAGGTGCACGTGTCGATGGT
LOC_Os03g25710
OsAffx.29692.1.S1_at--168--8891Chr03:14697266..14697290 (25 bp)
TGAGGCACGAGCACGGCGTCCTGCC
LOC_Os03g25710
OsAffx.29692.1.S1_at--81--3831Chr03:14697286..14697409 (25 bp)
CTGCCATTGCCGCACGAGGTTTTTA
LOC_Os03g25710
OsAffx.29692.1.S1_at--901--9152Chr12:18672396..18672418 (22 bp)
TGCCGCACGAGGTTTTTAGCCAAAA
NONE
OsAffx.29692.1.S1_at--1064--3772Chr05:14797149..14797173 (25 bp)
CTCCCGAAGACTCCCGAAGATAATC
NONE
OsAffx.29692.1.S1_at--170--9772Chr05:14797169..14797193 (25 bp)
TAATCCCGTGCCCGAAGATAATCTC
NONE
OsAffx.29692.1.S1_at--516--3054Chr10:2957774..2957935 (25 bp)
AATCTCGTGCCCGTTTTTGATCCAC
NONE
OsAffx.29692.1.S1_at--356--7612Chr05:14797345..14797369 (25 bp)
GGGAAGATCGCCGTCAAAATCGGCA
NONE
OsAffx.29692.1.S1_at--417--2452Chr05:14797360..14797384 (25 bp)
AAAATCGGCAACTTTAGAACAGAGA
NONE
Target Sequence 
CAACCTGTGGCCGGCGTTGAAGCAGGTGGAGGCGGTGCAGGGCGCGGAGGAGGAGGGTGACAAGGTGTTCGTCCACACCC
GCGGCCAGGTGAACGCGTACAGCCTCCGGCGAGGGAGGTGGCGGGGCGCCAACGACGTCGCCCGGTCGGTCGCCGGCAAG
GTGCACGTGTCGATGGTGAGGCACGAGCACGGCGTCCTGCCATTGCCGCACGAGGTTTTTAGCCAAAAGACTTCCTTCCT
TTTCAGCCCTAGGCTAGCCCGCTACCTCCCTCCATTTGGTCTGCTTCTCTTTGACCCTACCATCTTTAACTTTCCGAATA
TGACTACCATCTTCAACCTCCCGAAGACTCCCGAAGATAATCCCGTGCCCGAAGATAATCTCGTGCCCGTTTTTGATCCA
CTCGATCTACTCTTTCCGTTTTCCCCAAAATCAGAGCGTAAAATTCGGGATAAAAATGACCGGGGAAGATCGCCGTCAAA
ATCGGCAACTTTAGAACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis