Browse Element(s) Details


Os.55118.1.S1_at

Description gb:AK107517.1
DB_XREF= gi:32992726
TID=Os.55118.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F05, full insert sequence.
FL= gb:AK107517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2566011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55118.1.S1_at--836--6711Chr03:14669702..14669726 (25 bp)
GTTCTCCACGCGAAGACAAGGCACG
LOC_Os03g25660
Os.55118.1.S1_at--1143--5391Chr03:14669600..14669624 (25 bp)
GAAGCCGTTGACCACATCAGCAAGG
LOC_Os03g25660
Os.55118.1.S1_at--176--9411Chr03:14669521..14669545 (25 bp)
TCGTCATCATGGGTAGCGTTGCCTA
LOC_Os03g25660
Os.55118.1.S1_at--175--2671Chr03:14669392..14669416 (25 bp)
AAGCCGTTGCTCAGGAGTTGTCCGA
LOC_Os03g25660
Os.55118.1.S1_at--883--6351Chr03:14669369..14669393 (25 bp)
GATGCCTGGACGATTCTGTTGTCAA
LOC_Os03g25660
Os.55118.1.S1_at--612--2751Chr03:14669340..14669364 (25 bp)
AAGAAACTGAACTAGCTGCACCGGC
LOC_Os03g25660
Os.55118.1.S1_at--1116--5472Chr06:1878235..1878257 (22 bp)
GAACATACGGCTCAGATTTGCTACT
NONE
Os.55118.1.S1_at--315--211Chr03:14669293..14669317 (25 bp)
ATTTGCTACTGATCTCCACTTTTGC
LOC_Os03g25660
Os.55118.1.S1_at--811--10271Chr03:14669273..14669297 (25 bp)
TTTGCTGTTCTCTTTCAGCTGAAAT
LOC_Os03g25660
Os.55118.1.S1_at--146--1151Chr03:14669246..14669270 (25 bp)
AGTCCTATACTCCTTTTTTCTACTG
LOC_Os03g25660
Os.55118.1.S1_at--66--2051Chr03:14669206..14669230 (25 bp)
ACTTTGGTCCTCTGATTCTTCAAGA
LOC_Os03g25660
Target Sequence 
GTTCTCCACGCGAAGACAAGGCACGTCCTCGCTCGCTACGTCGCGCACCTCGGCGCCCAGCAGGATGACCCGGCGTACCG
CAGCTGGGACGTCCACCACCAGGAAGCCGTTGACCACATCAGCAAGGCGCTGAAGAGGGTGATCGATACGGTGTCAAACG
CCGAGGCGGGCAAGGTCGCCCTCGTCATCATGGGTAGCGTTGCCTACAGGTGCCCGCTGTGGGATGTGTGGGCATCGGAG
GCCGAAAAATTCACGGCAGTCGCTGCCCTCGAGGCCACTATGGCAACGAATGAGATGCGCTGCGCTCAGGAAGCCGTTGC
TCAGGAGTTGTCCGATGCCTGGACGATTCTGTTGTCAAGGCGAAGAAACTGAACTAGCTGCACCGGCGCATGGTGAACAT
ACGGCTCAGATTTGCTACTGATCTCCACTTTTGCTGTTCTCTTTCAGCTGAAATGAAGTCCTATACTCCTTTTTTCTACT
GGAAATGGGAAGGACGACTTTGGTCCTCTGATTCTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis