Browse Element(s) Details


Os.53854.1.S1_at

Description gb:AK100417.1
DB_XREF= gi:32985626
TID=Os.53854.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087N09, full insert sequence.
FL= gb:AK100417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2564011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25600Os.52730.1.S1_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25600Os.7447.1.S1_a_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53854.1.S1_at--546--8111Chr03:14661011..14661035 (25 bp)
GGACGACCTGGCAAGATCGCGGATC
LOC_Os03g25640
Os.53854.1.S1_at--399--1771Chr03:14661016..14661040 (25 bp)
ACCTGGCAAGATCGCGGATCGTCGT
LOC_Os03g25640
Os.53854.1.S1_at--609--7971Chr03:14661031..14661055 (25 bp)
GGATCGTCGTCCTGTCCAACGGCAA
LOC_Os03g25640
Os.53854.1.S1_at--738--2871Chr03:14661174..14661198 (25 bp)
AAGTGGACGAGGGTGTGCGCCGCGC
LOC_Os03g25640
Os.53854.1.S1_at--368--6291Chr03:14661255..14661279 (25 bp)
GATGATCAGCCCAGCTTCGGCGAGG
LOC_Os03g25640
Os.53854.1.S1_at--70--531Chr03:14661309..14661333 (25 bp)
ATCGACGTCGATGACCAGTACTTGT
LOC_Os03g25640
Os.53854.1.S1_at--877--7211Chr03:14661315..14661339 (25 bp)
GTCGATGACCAGTACTTGTCTATGA
LOC_Os03g25640
Os.53854.1.S1_at--463--8711Chr03:14661331..14661355 (25 bp)
TGTCTATGAACCCAATTACTTTGTT
LOC_Os03g25640
Os.53854.1.S1_at--131--9891Chr03:14661347..14661371 (25 bp)
TACTTTGTTTTGTTACTGAACACCG
LOC_Os03g25640
Os.53854.1.S1_at--154--8791Chr03:14661357..14661381 (25 bp)
TGTTACTGAACACCGATTGAGTTAT
LOC_Os03g25640
Os.53854.1.S1_at--708--6071Chr03:14661375..14661399 (25 bp)
GAGTTATTTATATCAGCTTAGTTTT
LOC_Os03g25640
Target Sequence 
GGACGACCTGGCAAGATCGCGGATCGTCGTCCTGTCCAACGGCAAGCTCTGCGCCGTGGCCGTGCGCCCGGCCACCAGCA
CGATGGAGATGTGGGTGCTCGACTCCTCCTCCTCCGACGCGCCGCGGAGATGGCGGCTCGACGCGTACAGCCTCCGGCGA
AGGAAGTGGACGAGGGTGTGCGCCGCGCGCCCCAGGAGTGGTTCCGTGGGCGTGGCGCTGCTGCCGCACCGGGAGAGCGT
TGCTGATGATCAGCCCAGCTTCGGCGAGGCGTCCCGGCTGCTCGACCACACCATCGACATCGACGTCGATGACCAGTACT
TGTCTATGAACCCAATTACTTTGTTTTGTTACTGAACACCGATTGAGTTATTTATATCAGCTTAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis