Browse Element(s) Details


Os.7447.1.S1_a_at

Description gb:AK102996.1
DB_XREF= gi:32988205
TID=Os.7447.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116E19, full insert sequence.
FL= gb:AK102996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2560011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25580NANA3+14615937..14618940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25590OsAffx.20387.1.S1_x_at1/113+14619564..14625758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25600Os.52730.1.S1_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25600Os.7447.1.S1_a_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7447.1.S1_a_at--317--4251Chr03:14641958..14641982 (25 bp)
CCGTCTTTGCTCAAATGACCGGTTT
LOC_Os03g25600
Os.7447.1.S1_a_at--273--3291Chr03:14641969..14641993 (25 bp)
CAAATGACCGGTTTCTTGTCCTGTC
LOC_Os03g25600
Os.7447.1.S1_a_at--991--10791Chr03:14641984..14642008 (25 bp)
TTGTCCTGTCCTCAGATGGACTGTA
LOC_Os03g25600
Os.7447.1.S1_a_at--583--711Chr03:14642023..14642047 (25 bp)
ATGATGAGGTTGTTTCACATGTTGC
LOC_Os03g25600
Os.7447.1.S1_a_at--615--2291Chr03:14642060..14642084 (25 bp)
AAATGTACCAGAGGGTGATCCTGCT
LOC_Os03g25600
Os.7447.1.S1_a_at--1080--8751Chr03:14642093..14642117 (25 bp)
TGTAGCCGAGCTGTTATGCCGTGCA
LOC_Os03g25600
Os.7447.1.S1_a_at--10--851Chr03:14642809..14642833 (25 bp)
ATGGACTTTCATGAGTTGCTGGATA
LOC_Os03g25600
Os.7447.1.S1_a_at--696--6671Chr03:14642823..14642847 (25 bp)
GTTGCTGGATATCCCTCAGGGTGAT
LOC_Os03g25600
Os.7447.1.S1_a_at--1160--7751Chr03:14642842..14642866 (25 bp)
GGTGATCGCCGAAAATACCATGATG
LOC_Os03g25600
Os.7447.1.S1_a_at--96--6851Chr03:14642869..14642893 (25 bp)
GTTTCTGTTATGGTAATTTCCCTTG
LOC_Os03g25600
Os.7447.1.S1_a_at--1019--1451Chr03:14642899..14642923 (25 bp)
AGAATTTGGCGATCTTCTGGTTGAG
LOC_Os03g25600
Target Sequence 
CCGTCTTTGCTCAAATGACCGGTTTCTTGTCCTGTCCTCAGATGGACTGTATCAATATTTCAGCAATGATGAGGTTGTTT
CACATGTTGCATGGTTTATGGAAAATGTACCAGAGGGTGATCCTGCTCAATANCTTGTAGCCGAGCTGTTATGCCGTGCA
GCAAAAAAGAATGGCATGGACTTTCATGAGTTGCTGGATATCCCTCAGGGTGATCGCCGAAAATACCATGATGATGTTTC
TGTTATGGTAATTTCCCTTGAAGGCAGAATTTGGCGATCTTCTGGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7447.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis