Browse Element(s) Details


Os.52730.1.S1_at

Description gb:AK068964.1
DB_XREF= gi:32978988
TID=Os.52730.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170M15, full insert sequence.
FL= gb:AK068964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2560011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25580NANA3+14615937..14618940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25590OsAffx.20387.1.S1_x_at1/113+14619564..14625758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25600Os.52730.1.S1_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25600Os.7447.1.S1_a_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52730.1.S1_at--477--6151Chr03:14636034..14636058 (25 bp)
GAGGTGCCATTGTTCTGTGGATTGA
LOC_Os03g25600
Os.52730.1.S1_at--392--9491Chr03:14636092..14636116 (25 bp)
TCTGCTGCTTGGTTTGTCTAACTGA
LOC_Os03g25600
Os.52730.1.S1_at--141--1571Chr03:14636126..14636150 (25 bp)
AGCTAGCTGGCCTTACAATGGTGAA
LOC_Os03g25600
Os.52730.1.S1_at--490--8631Chr03:14636152..14636176 (25 bp)
TGGGTCACCATCTGTTCATGGCGAT
LOC_Os03g25600
Os.52730.1.S1_at--906--2731Chr03:14636204..14636228 (25 bp)
AAGAATGGCACTGCGCTGCTTGCCT
LOC_Os03g25600
Os.52730.1.S1_at--416--2871Chr03:14636262..14636286 (25 bp)
AAGTGGCCTAGCACTTGTTTGCTCC
LOC_Os03g25600
Os.52730.1.S1_at--898--1011Chr03:14636358..14636382 (25 bp)
AGGTTTGACTCCTTGCTCAGATGTG
LOC_Os03g25600
Os.52730.1.S1_at--693--1311Chr03:14636376..14636400 (25 bp)
AGATGTGGCTCTCTTCATCGTGGAC
LOC_Os03g25600
Os.52730.1.S1_at--383--2131Chr03:14636401..14636425 (25 bp)
ACAGGTGTGGCTTTTGTGCGGCATA
LOC_Os03g25600
Os.52730.1.S1_at--329--6611Chr03:14636430..14636454 (25 bp)
GATTGGTCAGTTTGTATTCTAGGCA
LOC_Os03g25600
Os.52730.1.S1_at--1029--6231Chr03:14636608..14636631 (24 bp)
GATGGCACTTGTAATACCGAATCTC
LOC_Os03g25600
Target Sequence 
GAGGTGCCATTGTTCTGTGGATTGAATGTTGTGGTGCAGCTGGTTGCCTTGTTCCTCCTCTGCTGCTTGGTTTGTCTAAC
TGATCGGCCCCTAGCTAGCTGGCCTTACAATGGTGAACTGGGTCACCATCTGTTCATGGCGATGGTTAGGATGATGGCAG
TGGAAGGATGAAGAATGGCACTGCGCTGCTTGCCTGCTTGGCTACTATTGTGCTAAATAAGGAATGTCAAGTGGCCTAGC
ACTTGTTTGCTCCTCACTGGTTGAGGGTGGCAGCCCACTCCTCTCACTGTGTGGGGCTTGACTAATTGAGCTCAGGTGTG
GCTAAGGTTTGACTCCTTGCTCAGATGTGGCTCTCTTCATCGTGGACACAGGTGTGGCTTTTGTGCGGCATAGTTTGATT
GGTCAGTTTGTATTCTAGGCAACATGTTCATAATGAGTAATATTAATTCGCTTTAGCTGTTTATTGATTGATAGAAGAAA
TTAATGGTTGATTAATCATTCCTTAATACATTGATGTATCTGTATTCGTATATAGCTTTTTATAGTATGTGTAAATTGAA
CACTTACTAATTACGATGGCACTTGTAATACCGAATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis