Browse Element(s) Details


Os.24639.1.S1_at

Description gb:AK073312.1
DB_XREF= gi:32983335
TID=Os.24639.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025K03, full insert sequence.
FL= gb:AK073312.1 gb:AK064323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2562011/11Low temperature viability protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25590OsAffx.20387.1.S1_x_at1/113+14619564..14625758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g25600Os.52730.1.S1_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25600Os.7447.1.S1_a_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24639.1.S1_at--806--6491Chr03:14652095..14652119 (25 bp)
GATATCATCAGGCTTCAAGGCAAAG
LOC_Os03g25620
Os.24639.1.S1_at--1137--5991Chr03:14652119..14652143 (25 bp)
GAGAGACTTCCAGTAGAATACCTAC
LOC_Os03g25620
Os.24639.1.S1_at--493--2651Chr03:14652182..14652206 (25 bp)
AAGCCAACAGAAACTCCAAGTGCTG
LOC_Os03g25620
Os.24639.1.S1_at--991--4891Chr03:14652864..14652884 (21 bp)
GCTTCTATACGGCTAATGTAATAAC
LOC_Os03g25620
Os.24639.1.S1_at--714--2491Chr03:14653494..14653518 (25 bp)
AACATGTTCTGCACGATAACGACGC
LOC_Os03g25620
Os.24639.1.S1_at--222--7211Chr03:14653526..14653550 (25 bp)
GTCGTAAGGAGATCCTCATCCTACA
LOC_Os03g25620
Os.24639.1.S1_at--746--9471Chr03:14653541..14653565 (25 bp)
TCATCCTACAAGGTACGACGGCAAG
LOC_Os03g25620
Os.24639.1.S1_at--471--10111Chr03:14653567..14653591 (25 bp)
TATGATACACTGATACCTCCTGGGT
LOC_Os03g25620
Os.24639.1.S1_at--802--9271Chr03:14653584..14653608 (25 bp)
TCCTGGGTCATCTTGTGCCATGTTT
LOC_Os03g25620
Os.24639.1.S1_at--287--7871Chr03:14653611..14653635 (25 bp)
GGTTTTTGTCGACTAGATACCCAGT
LOC_Os03g25620
Os.24639.1.S1_at--1040--9971Chr03:14653639..14653663 (25 bp)
TACCATGTTTGGACTTCTGTATGAG
LOC_Os03g25620
Target Sequence 
GATATCATCAGGCTTCAAGGCAAAGAGAGACTTCCAGTAGAATACCTACCACAGAGGAAAAGAAATGGTGAGAAGGAGAA
GAAAGCAAAGCCAACAGAAACTCCAAGTGCTGAAAGTTTTAAGAAAGGAGCTCAAAAGGAAACAAAGGAGGAAAAGAAAG
CAAGAAAGGCTGCAGTGAAAGAAGAGAAGAGAGAAGCACGGAAAGCAAAGAAAGAGCTGANAGGCCTGTACAAATTTGAA
ACACAGAAGGCTCAGAAGGTTGCTGCTGTTNCAGGGCCAGCTTCTATACGGCTAATGTAATAACCATGTTGATTTGTAAA
CATGTTCTGCACGATAACGACGCAATGTGNGTCGTAAGGAGATCCTCATCCTACAAGGTACGACGGCAAGATATGATACA
CTGATACCTCCTGGGTCATCTTGTGCCATGTTTGTGGTTTTTGTCGACTAGATACCCAGTNTATACCATGTTTGGACTTC
TGTATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis