Browse Element(s) Details


OsAffx.25226.1.S1_at

Description tigr:9631.m02515
TID=OsAffx.25226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25226.1.S1_at--87--91Chr03:14674147..14674171 (25 bp)
ATTCCTTCAATTTCTCACGTTACAC
LOC_Os03g25670
OsAffx.25226.1.S1_at--801--10471Chr03:14674876..14674900 (25 bp)
TTACAGGTTTTTGCACAGGTTTATG
LOC_Os03g25670
OsAffx.25226.1.S1_at--559--6791Chr03:14674914..14674938 (25 bp)
GTTATGTCTTCTTACTCGGTGCAAA
LOC_Os03g25670
OsAffx.25226.1.S1_at--1035--6131Chr03:14675115..14675139 (25 bp)
GAGGGATCATCATATCATCTCGTTA
LOC_Os03g25670
OsAffx.25226.1.S1_at--479--6551Chr03:14675160..14675184 (25 bp)
GATTACCAGCGCTTACAAACGACAG
LOC_Os03g25670
OsAffx.25226.1.S1_at--696--2591Chr03:14675177..14675201 (25 bp)
AACGACAGTACGAAGCTAGGCTCCT
LOC_Os03g25670
OsAffx.25226.1.S1_at--178--4871Chr03:14675191..14675215 (25 bp)
GCTAGGCTCCTGAAATTCTTACATG
LOC_Os03g25670
OsAffx.25226.1.S1_at--158--10051Chr03:14675243..14675267 (25 bp)
TAGTAGCATTCATATCAGCCTTTAT
LOC_Os03g25670
OsAffx.25226.1.S1_at--40--1691Chr03:14675259..14675283 (25 bp)
AGCCTTTATGCTATCCCAGAGCTTA
LOC_Os03g25670
OsAffx.25226.1.S1_at--168--1111Chr03:14675345..14675369 (25 bp)
AGTGGGCATTTTGCTACCATGGTGC
LOC_Os03g25670
OsAffx.25226.1.S1_at--295--9851Chr03:14675385..14675409 (25 bp)
TACAACGTTCGAGTGGACGCCAATA
LOC_Os03g25670
Target Sequence 
ATTCCTTCAATTTCTCACGTTACACCTAACTATTACCCAGAAAGACGGTCACGATAGTGCAGAGGTTGAGCTGATAAAAG
ATATACCACAACTTCCTCACGCTACATCTTTATCATTACAGGTTTTTGCACAGGTTTATGATATTGCTAGTGTGTTATGT
CTTCTTACTCGGTGCAAATTTCTCAAACATCTCGAACTTAACATAAAATATTGTTCGATGGCAGAATATTGCAAAAGACC
TACAGGTATCGGTACCCAAAATCAGAGGGATCATCATATCATCTCGTTAGAGCATCTTCAGGATATAAAGATTACCAGCG
CTTACAAACGACAGTACGAAGCTAGGCTCCTGAAATTCTTACATGCAAGCGCACCGGCCTTGAAGAAGATGATAGTAGCA
TTCATATCAGCCTTTATGCTATCCCAGAGCTTACAAATATGTGCGAAAGAATGCGAAGAATTTCTACATAGCATTCCACT
TAATAAGGAAGGAAAGTGGGCATTTTGCTACCATGGTGCTCATATGCAAGATTTTACAACGTTCGAGTGGACGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis