Browse Element(s) Details


OsAffx.25225.1.S1_at

Description tigr:9631.m02513
TID=OsAffx.25225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2565011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25600Os.52730.1.S1_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25600Os.7447.1.S1_a_at11/113+14635042..14643606Protein phosphatase 2C containing protein, expressed
LOC_Os03g25610NANA3+14646578..14647185heavy metal-associated domain containing protein
LOC_Os03g25620Os.24639.1.S1_at11/113+14649578..14653758Low temperature viability protein, expressed
LOC_Os03g25640Os.53854.1.S1_at11/113+14659198..14661459F-box domain containing protein, expressed
LOC_Os03g25650OsAffx.25225.1.S1_at11/113+14664648..14666800F-box domain containing protein
LOC_Os03g25660Os.55118.1.S1_at11/113+14669161..14671392expressed protein
LOC_Os03g25670OsAffx.25226.1.S1_at11/113+14673191..14675448hypothetical protein
LOC_Os03g25680Os.55337.1.S1_at11/113+14676898..14677686expressed protein
LOC_Os03g25690OsAffx.21870.2.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.3.S1_x_at3/113+14679585..14680779hypothetical protein
LOC_Os03g25690OsAffx.21870.1.S1_at1/113+14679585..14680779hypothetical protein
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25225.1.S1_at--660--4671Chr03:14665220..14665244 (25 bp)
GCGGTTGAACGTGCTCGTGTTCGAC
LOC_Os03g25650
OsAffx.25225.1.S1_at--711--5451Chr03:14665214..14665238 (25 bp)
GAACGTGCTCGTGTTCGACACAGCG
LOC_Os03g25650
OsAffx.25225.1.S1_at--269--3791Chr03:14665207..14665231 (25 bp)
CTCGTGTTCGACACAGCGCGCGAGA
LOC_Os03g25650
OsAffx.25225.1.S1_at--293--1451Chr03:14665114..14665138 (25 bp)
AGAAGAAAGGCCTGGCCATGTCGCG
LOC_Os03g25650
OsAffx.25225.1.S1_at--546--711Chr03:14664944..14664968 (25 bp)
ATGATGTGGGACAAGCGCGACCTGT
LOC_Os03g25650
OsAffx.25225.1.S1_at--372--4611Chr03:14664928..14664952 (25 bp)
GCGACCTGTCGAGGGCTTTCTCGTC
LOC_Os03g25650
OsAffx.25225.1.S1_at--96--8031Chr03:14664861..14664885 (25 bp)
GGAGGTGATCCTCCACAACGACGGC
LOC_Os03g25650
OsAffx.25225.1.S1_at--985--511Chr03:14664832..14664856 (25 bp)
ATCGACGCGTATGCCGGCGCAGGGC
LOC_Os03g25650
OsAffx.25225.1.S1_at--168--8591Chr03:14664806..14664830 (25 bp)
TGGTCGACGGTGTCCGTCTCCCGCT
LOC_Os03g25650
OsAffx.25225.1.S1_at--876--891Chr03:14664732..14664756 (25 bp)
AGGCGTCGCGGCTGTTGGCCCAAAA
LOC_Os03g25650
OsAffx.25225.1.S1_at--723--7231Chr03:14664728..14664752 (25 bp)
GTCGCGGCTGTTGGCCCAAAACCGG
LOC_Os03g25650
Target Sequence 
GCGGTTGAACGTGCTCGTGTTCGACACAGCGCGCGAGAGGTTCCGGCTGATGGAGGCGCCGCCGTGGGACGACAGCCGTG
GCGGGGGGGGGGGGGGGGGGGGGAGGAGAAGAAAGGCCTGGCCATGTCGCGGGTCGTCGTCCTGTCCGGCGTCGGCAAGC
TCTGCGCCGTGGCCGTCTCGCCGGCGACGAACACGATGGAGATGTGGGTGCTCGACGACGACGACTCCTCCGGCGGCGCG
CGGGCGTGGCGGCTCGCGGAGAGGGTCGGCCTGGTGATGATGTGGGACAAGCGCGACCTGTCGAGGGCTTTCTCGTCGGC
GACGCAGGTGTCAGCGGTGCAGGGCGACGCGGAGGGCGAGGAGGTGATCCTCCACAACGACGGCCAACATCGACGCGTAT
GCCGGCGCAGGGCGTGGTCGACGGTGTCCGTCTCCCGCTTCGCCACGCTGCTGCCGCAGCGTCGTGCGGCACGACGTGAG
CTTCGGCGAGGCGTCGCGGCTGTTGGCCCAAAACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis