Browse Element(s) Details


Os.52886.1.S1_at

Description gb:AK069719.1
DB_XREF= gi:32979743
TID=Os.52886.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026H16, full insert sequence.
FL= gb:AK069719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2575011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25700OsAffx.13030.1.S1_x_at11/113+14687364..14691474hypothetical protein
LOC_Os03g25710OsAffx.29692.1.S1_at11/113+14695398..14698160hypothetical protein
LOC_Os03g25720Os.26725.1.S1_at10/113+14699870..14704030Hepatocellular carcinoma-associated antigen 59 family protein, expressed
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed
LOC_Os03g25770Os.8809.1.S1_s_at11/113+14730174..14733706RNA recognition motif family protein, expressed
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52886.1.S1_at--747--6931Chr03:14716552..14716576 (25 bp)
GTAGGATATTCATCTCTCGTCTGCT
LOC_Os03g25750
Os.52886.1.S1_at--733--7171Chr03:14716570..14716594 (25 bp)
GTCTGCTTTTCTCCAGCGGAAGAAG
LOC_Os03g25750
Os.52886.1.S1_at--106--7771Chr03:14716625..14716649 (25 bp)
GGTGAATGCACCTGTCTAACTCAAA
LOC_Os03g25750
Os.52886.1.S1_at--947--9591Chr03:14716676..14716700 (25 bp)
TCATTGCGTGCACTGTTGTTGGCTA
LOC_Os03g25750
Os.52886.1.S1_at--648--6491Chr03:14716741..14716765 (25 bp)
GATAGCACTGGCATGTCAACTGACT
LOC_Os03g25750
Os.52886.1.S1_at--758--2031Chr03:14716763..14716787 (25 bp)
ACTAGTGATTGCTGGTGTCTGTCTG
LOC_Os03g25750
Os.52886.1.S1_at--9--7191Chr03:14716779..14716803 (25 bp)
GTCTGTCTGTACTAGGTGATCTTGC
LOC_Os03g25750
Os.52886.1.S1_at--469--5511Chr03:14716842..14716866 (25 bp)
GAAAATGTCGATTCTTTTCTCCCTT
LOC_Os03g25750
Os.52886.1.S1_at--426--1992Chr03:14716940..14716964 (25 bp)
ACTGCCGTAGCACTTGGATTTGGAA
LOC_Os03g25750
Os.52886.1.S1_at--2--8212Chr03:14717021..14717045 (25 bp)
GGAATTGGCCGTGATCATTTCTCAC
LOC_Os03g25750
Os.52886.1.S1_at--852--191Chr03:14717037..14717061 (25 bp)
ATTTCTCACGAGATCTCTTCTCATG
LOC_Os03g25750
Target Sequence 
GTAGGATATTCATCTCTCGTCTGCTTTTCTCCAGCGGAAGAAGAGGTGTAGTGTAGGTAGGCTAATTGCATAAGGTGAAT
GCACCTGTCTAACTCAAATACACGCCCTAACTAAGGTTGTTGATTCATTGCGTGCACTGTTGTTGGCTAGAGGTTTTCGT
CTGGCTTCTGTTGGGTTGGGAATGTAGAGGATAGCACTGGCATGTCAACTGACTAGTGATTGCTGGTGTCTGTCTGTACT
AGGTGATCTTGCAGCAAGTGTACTAGCATGTCTGCATGCTTCACCTTCGTGAAAATGTCGATTCTTTTCTCCCTTTGTTC
CTTTTCTTTGGCAAATATACAGATATCTTCATTTTGCGACGAGAATATACTGTGCCATGGGAAATGGTACTGCCGTAGCA
CTTGGATTTGGAATTGGCCGTGACCATTTCCCATGGTTTATACAAAAACAGGAGATCTCTTCTGTTATTGGAATTGGCCG
TGATCATTTCTCACGAGATCTCTTCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis