Browse Element(s) Details


Os.8809.1.S1_s_at

Description gb:BI798212
DB_XREF= gi:15849936
DB_XREF=H100F12
CLONE=H100F12
TID=Os.8809.1
CNT=17
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8809 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T50647 (A.thaliana) T50647 serinearginine-rich protein (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2577011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25750Os.52886.1.S1_at11/113+14707574..14717111expressed protein
LOC_Os03g25750Os.37024.1.S1_s_at1/113+14707574..14717111expressed protein
LOC_Os03g25760OsAffx.25227.1.S1_at11/113+14717901..14720405calmodulin-binding family protein, putative, expressed
LOC_Os03g25770Os.8809.1.S1_s_at11/113+14730174..14733706RNA recognition motif family protein, expressed
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8809.1.S1_s_at--155--1711Chr03:14730703..14730727 (25 bp)
ACCAGCGGACAGCAGATCACGAAGT
LOC_Os03g25770
Os.8809.1.S1_s_at--720--6151Chr03:14730634..14730658 (25 bp)
GAGGTCTCTTTCTGTTAGCCGGTGA
LOC_Os03g25770
Os.8809.1.S1_s_at--992--6171Chr03:14730611..14730635 (25 bp)
GAGGAGCTTAGGACCCAAATGCCAA
LOC_Os03g25770
Os.8809.1.S1_s_at--1080--6291Chr03:14730560..14730584 (25 bp)
GATGATGACTGCTTCTTGTTACTAG
LOC_Os03g25770
Os.8809.1.S1_s_at--1143--10091Chr03:14730512..14730536 (25 bp)
TAGGCCATCCTGATCTTCTAGGAAT
LOC_Os03g25770
Os.8809.1.S1_s_at--455--8671Chr03:14730479..14730503 (25 bp)
TGTGTGGTCTTCTAGGATTTCCTTT
LOC_Os03g25770
Os.8809.1.S1_s_at--497--8931Chr03:14730397..14730421 (25 bp)
TGACCTCGTGCCCATTTTAAGTGAC
LOC_Os03g25770
Os.8809.1.S1_s_at--93--10411Chr03:14730369..14730393 (25 bp)
TTATTGCCTTTTGTGGTCCTGTAAC
LOC_Os03g25770
Os.8809.1.S1_s_at--218--731Chr03:14730337..14730361 (25 bp)
ATGATTTCCCCATTGGCGAGCAGGC
LOC_Os03g25770
Os.8809.1.S1_s_at--157--10051Chr03:14730280..14730304 (25 bp)
TAGTTGTCTCAATTCTGCTTTTCAT
LOC_Os03g25770
Os.8809.1.S1_s_at--314--9491Chr03:14730267..14730291 (25 bp)
TCTGCTTTTCATACTCATCATCTGG
LOC_Os03g25770
Target Sequence 
ACCAGCGGACAGCAGATCACGAAGTAGAAGCCTCTCTGATGACCGCCGCAGCAAGTCACCTGACAGGGAGAGGTCTCTTT
CTGTTAGCCGGTGAGGAGCTTAGGACCCAAATGCCAACGGGGCACTNGGTTGAACCATGTTTCGATGATGACTGCTTCTT
GTTACTAGGTTGAACCATGTTTCGGAATTTTTAGGCCATCCTGATCTTCTAGGAATGTTAATGATGTGTGGTCTTCTAGG
ATTTCCTTTTCATTGTTGGATCCTGAAGATAAAAAGTCNGAAGCATCGAACAACTTATCATATTCTTTGACCTCGTGCCC
ATTTTAAGTGACTGGTTATTGCCTTTTGTGGTCCTGTAACGTTACCNATGATTTCCCCATTGGCGAGCAGGCATTGTTAA
TGTAAGAACTCAAGTCAGGATTACTAGTTGTCTCAATTCTGCTTTTCATACTCATCATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8809.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis