Browse Element(s) Details


OsAffx.13034.1.S1_at

Description tigr:9631.m02532
TID=OsAffx.13034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2582011/11amino acid permease family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25770Os.8809.1.S1_s_at11/113+14730174..14733706RNA recognition motif family protein, expressed
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25830NANA3+14761877..14762146hypothetical protein
LOC_Os03g25840NANA3+14763522..14764514amino acid permease family protein, putative, expressed
LOC_Os03g25850OsAffx.13036.1.S1_at11/113+14767021..14768718expressed protein
LOC_Os03g25850Os.54494.1.S1_at1/113+14767021..14768718expressed protein
LOC_Os03g25869Os.52960.3.S1_at11/113+14768978..14776830expressed protein
LOC_Os03g25869Os.52960.1.S1_x_at11/113+14768978..14776830expressed protein
LOC_Os03g25869OsAffx.13037.1.S1_x_at1/113+14768978..14776830expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13034.1.S1_at--697--1931Chr03:14754569..14754905 (25 bp)
ACGGCGTCATGAGGGTGGTATCACA
LOC_Os03g25820
OsAffx.13034.1.S1_at--864--7711Chr03:14754557..14754580 (24 bp)
GGGTGGTATCACAATGTTATATGGA
LOC_Os03g25820
OsAffx.13034.1.S1_at--384--331Chr03:14754520..14754544 (25 bp)
ATACAAGGTAAATCACTGCCAATTC
LOC_Os03g25820
OsAffx.13034.1.S1_at--1103--3071Chr03:14754510..14754534 (25 bp)
AATCACTGCCAATTCAAATCTATGC
LOC_Os03g25820
OsAffx.13034.1.S1_at--919--9011Chr03:14754488..14754512 (25 bp)
TGCAAGGATTGTCACTCATCACCAT
LOC_Os03g25820
OsAffx.13034.1.S1_at--440--3351Chr03:14754469..14754493 (25 bp)
CACCATGTACATGTATAAGAGGCAT
LOC_Os03g25820
OsAffx.13034.1.S1_at--80--2391Chr03:14754426..14754450 (25 bp)
AACACTACTGCAGAAAAGACCTTTG
LOC_Os03g25820
OsAffx.13034.1.S1_at--984--2671Chr03:14754389..14754413 (25 bp)
AAGCGGCAATAGGTGTCGGATTTCC
LOC_Os03g25820
OsAffx.13034.1.S1_at--1069--8216Chr12:12952493..12952513 (21 bp)
GGCAATAGGTGTCGGATTTCCCAAC
NONE
OsAffx.13034.1.S1_at--29--7951Chr03:14754372..14754396 (25 bp)
GGATTTCCCAACCTACACTTAGAAG
LOC_Os03g25820
OsAffx.13034.1.S1_at--698--4291Chr03:14754361..14754385 (25 bp)
CCTACACTTAGAAGGCGGCACCATT
LOC_Os03g25820
Target Sequence 
ACGGCGTCATGAGGGTGGTATCACAATGTTATATGGAACATGTATTCAAATACAAGGTAAATCACTGCCAATTCAAATCT
ATGCAAGGATTGTCACTCATCACCATGTACATGTATAAGAGGCATGTTGAAGAACGAAGTGTCAACACTACTGCAGAAAA
GACCTTTGGTGCCAGTTGGGAAGCGGCAATAGGTGTCGGATTTCCCAACCTACACTTAGAAGGCGGCACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis