Browse Element(s) Details


Os.54494.1.S1_at

Description gb:AK106728.1
DB_XREF= gi:32991937
TID=Os.54494.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full insert sequence.
FL= gb:AK106728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g258501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25830NANA3+14761877..14762146hypothetical protein
LOC_Os03g25840NANA3+14763522..14764514amino acid permease family protein, putative, expressed
LOC_Os03g25850OsAffx.13036.1.S1_at11/113+14767021..14768718expressed protein
LOC_Os03g25850Os.54494.1.S1_at1/113+14767021..14768718expressed protein
LOC_Os03g25869Os.52960.3.S1_at11/113+14768978..14776830expressed protein
LOC_Os03g25869Os.52960.1.S1_x_at11/113+14768978..14776830expressed protein
LOC_Os03g25869OsAffx.13037.1.S1_x_at1/113+14768978..14776830expressed protein
LOC_Os03g25890NANA3+14785418..14789460retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54494.1.S1_at--797--10831Chr11:26684759..26684783 (25 bp)
TTGTGGAAGAGCTCATCCGCTGACG
NONE
Os.54494.1.S1_at--377--1371Chr11:26684752..26684776 (25 bp)
AGAGCTCATCCGCTGACGACATCGC
NONE
Os.54494.1.S1_at--549--5332Chr11:26684691..26684715 (25 bp)
GAAGTCGAAGTCACCGAGGCACCCG
NONE
Os.54494.1.S1_at--569--5971Chr11:26684605..26684629 (25 bp)
GAGAAGCGAAGTGGTGCTCCCGCTC
NONE
Os.54494.1.S1_at--785--5751Chr11:26684403..26684427 (25 bp)
GACGGTGGGAGTTTTTAACTGCTCG
NONE
Os.54494.1.S1_at--17--6571Chr11:26684368..26684392 (25 bp)
GATTCAGCCCCTTGGTTTTACATAA
NONE
Os.54494.1.S1_at--594--7811Chr11:26684269..26684293 (25 bp)
GGTAATGTAATTGTCCCGGTGATCA
NONE
Os.54494.1.S1_at--1111--8831Chr11:26684250..26684274 (25 bp)
TGATCAGATCTGAACCCTCTTGGAT
NONE
Os.54494.1.S1_at--222--5431Chr11:26684239..26684263 (25 bp)
GAACCCTCTTGGATTGCGTAATTGT
NONE
Os.54494.1.S1_at--1067--51Chr11:26684227..26684251 (25 bp)
ATTGCGTAATTGTAGGATCGTCCTC
NONE
Os.54494.1.S1_at--1105--6911Chr11:26684216..26684240 (25 bp)
GTAGGATCGTCCTCTTTTGTGGTGT
NONE
Target Sequence 
TTGTGGAAGAGCTCATCCGCTGACGACATCGCCGCCGCGGAGGGAGACGGGAACCGCGACGAGAAGTCGAAGTCGAAGTC
ACCGAGGCACCCGCCGCCGCCGCCGCCGCGGGTGGGGCTCGCCGGCGCGCTGAAGAAGCACGGCGCGCCGTGGGGAGAAG
CGAAGTGGTGCTCCCGCTCCCGCTCCCGCGTCGGGCTGGACGGCGCGCTGACGAACGGGGTGGAGCAGGCGCTGTCGGCG
AGAGGGTCGCCGGGGATGGCAATGGCGGTGGCTGCGTGGTCGGCGGCGGCCGCCATGGCTGGCTGGGGGTGGTGGTTTGG
TGCGGCGAGCGAAGTGGTGGGAGTGAGGAGGAGTGGGACGGTGGGAGTTTTTAACTGCTCGGGTTTTTTTCGATTCAGCC
CCTTGGTTTTACATAAATTTTGGGGTTTCAGTGTGTTAGTGGAGTTGAGGGGTTCTAAGGTGATTAGGGGTGAGTTTCGG
GGGGTGAGGTGGTAATGTAATTGTCCCGGTGATCAGATCTGAACCCTCTTGGATTGCGTAATTGTAGGATCGTCCTCTTT
TGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis