Browse Element(s) Details


Os.52975.1.S1_at

Description gb:AK070219.1
DB_XREF= gi:32980243
TID=Os.52975.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043K12, full insert sequence.
FL= gb:AK070219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3596011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35940OsAffx.6488.1.S1_at11/119+20690835..20692635Cytochrome P450 78A3, putative, expressed
LOC_Os09g35950OsAffx.19542.3.S1_x_at4/119+20696949..20701172retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52975.1.S1_at--662--10231Chr09:20716482..20716506 (25 bp)
TATTGGGAGATCCACCTGGGCAAAA
LOC_Os09g35960
Os.52975.1.S1_at--623--2251Chr09:20716459..20716483 (25 bp)
AAATAAGGTTGCGTGCTCCACCAAC
LOC_Os09g35960
Os.52975.1.S1_at--902--2051Chr09:20716429..20716453 (25 bp)
ACTTGTTGCTTTATGCCATTGCGGC
LOC_Os09g35960
Os.52975.1.S1_at--508--2571Chr09:20716318..20716342 (25 bp)
AACTGGACGTCTGGAGGCTACTCGA
LOC_Os09g35960
Os.52975.1.S1_at--723--5831Chr09:20716283..20716307 (25 bp)
GACCTGGTTGTTAACTTCCACGACA
LOC_Os09g35960
Os.52975.1.S1_at--418--8851Chr09:20716253..20716277 (25 bp)
TGATCTGAGGGATGCGTTTCTCTTT
LOC_Os09g35960
Os.52975.1.S1_at--1143--6831Chr09:20716238..20716262 (25 bp)
GTTTCTCTTTGTTCTTGCGGTAGAA
LOC_Os09g35960
Os.52975.1.S1_at--1120--2311Chr09:20716147..20716171 (25 bp)
AAAGTGTTATGTTCCCTGTAGCTCG
LOC_Os09g35960
Os.52975.1.S1_at--1004--1551Chr09:20716128..20716152 (25 bp)
AGCTCGTACCGGCATAGAACATTAG
LOC_Os09g35960
Os.52975.1.S1_at--627--9371Chr09:20716054..20716078 (25 bp)
TCGAGTGTTCCTCACACACGAAGAT
LOC_Os09g35960
Os.52975.1.S1_at--830--9911Chr09:20716023..20716047 (25 bp)
TACTGCTTGATGTTACTGAGGCTCT
LOC_Os09g35960
Target Sequence 
TATTGGGAGATCCACCTGGGCAAAAATAAGGTTGCGTGCTCCACCAACCGACGACTTGTTGCTTTATGCCATTGCGGCTT
GCGTCCTCCAGAGGAGGAAGCTGATAATCGAGAAGTATAGTAGCATGGACGAGATATTGCGAGAATGCAATAGCATGGCT
GGGCAACTGGACGTCTGGAGGCTACTCGACGACGCACACGACCTGGTTGTTAACTTCCACGACAAAATCTGATCTGAGGG
ATGCGTTTCTCTTTGTTCTTGCGGTAGAACAAATATAGACCTCGACATTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTT
TCTTTGCTGCTTGCAGAAAAGTGTTATGTTCCCTGTAGCTCGTACCGGCATAGAACATTAGAACCCACTTCTAAGTATAG
AGATTGTTGTAACTTAAAAAGAGTGAGGACTCGAGTGTTCCTCACACACGAAGATCAGCAATACTGCTTGATGTTACTGA
GGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis