Browse Element(s) Details


Os.52977.1.S1_at

Description gb:AK070228.1
DB_XREF= gi:32980252
TID=Os.52977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042L16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042L16, full insert sequence.
FL= gb:AK070228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0912011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein
LOC_Os03g09100Os.13903.1.S1_at10/113+4705256..4713120anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os03g09110Os.7871.1.S1_at10/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09110Os.50644.2.S1_x_at1/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09120Os.52977.1.S1_at11/113+4727821..4729370expressed protein
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52977.1.S1_at--247--151Chr03:4728331..4728355 (25 bp)
ATTTCCAAATTACTCGTTCGATCGA
LOC_Os03g09120
Os.52977.1.S1_at--104--3891Chr03:4728266..4728290 (25 bp)
CTGTCGTTATAGAGCGCATGTGTAC
LOC_Os03g09120
Os.52977.1.S1_at--1162--4991Chr03:4728251..4728275 (25 bp)
GCATGTGTACGCGTAGCTATCTACA
LOC_Os03g09120
Os.52977.1.S1_at--1137--9671Chr03:4728214..4728238 (25 bp)
TCACTATGTAGCTACGACGTCGTAC
LOC_Os03g09120
Os.52977.1.S1_at--264--6451Chr03:4728068..4728092 (25 bp)
GATCAATAGCTAGCTGGTGACCGAT
LOC_Os03g09120
Os.52977.1.S1_at--769--6931Chr03:4727983..4728007 (25 bp)
GTAGTCTCTGGAACTTTGTGGGTAT
LOC_Os03g09120
Os.52977.1.S1_at--848--8631Chr03:4727965..4727989 (25 bp)
TGGGTATGCGTCACTAGCTCATCAG
LOC_Os03g09120
Os.52977.1.S1_at--648--9691Chr03:4727938..4727962 (25 bp)
TCACTTGTCCGTGCATGTATGCGAA
LOC_Os03g09120
Os.52977.1.S1_at--919--7211Chr03:4727908..4727932 (25 bp)
GTCGAGTGTGTGCTTTGCTATACCA
LOC_Os03g09120
Os.52977.1.S1_at--57--3691Chr03:4727883..4727907 (25 bp)
CTATATATGTGTGTGCGCGTTGTAC
LOC_Os03g09120
Os.52977.1.S1_at--529--5591Chr03:4727832..4727856 (25 bp)
GAAATTTATTGGTGCACGCCTGCTG
LOC_Os03g09120
Target Sequence 
ATTTCCAAATTACTCGTTCGATCGATCGATCGCTCGTCGTCTCTGCTGCTTGACCCGTGCAACGGCTGTCGTTATAGAGC
GCATGTGTACGCGTAGCTATCTACAACATTAATATTGTCACTATGTAGCTACGACGTCGTACAAGTGCAATAACCAAACA
GTGGTAATTAAGGCCACTGTTAGTGTACGTACGTAACAAGATGATCATTAGGCGGCTTAATTAAAAAGGGGAAATTGAGT
TCAAAAAGGAGCCAGTATGTAGTGATCAATAGCTAGCTGGTGACCGATGGGCGATGGTGAGGTATGAATATATATATTAT
GATGTAGATATTAAGTGCAAATATAAATGTAGTCTCTGGAACTTTGTGGGTATGCGTCACTAGCTCATCAGGCTCACTTG
TCCGTGCATGTATGCGAATTGGGGTCGAGTGTGTGCTTTGCTATACCACTATATATGTGTGTGCGCGTTGTACAAAAGTT
AGTTGGCTGTTGGTGAGCAGAAATTTATTGGTGCACGCCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis