Browse Element(s) Details


Os.7871.1.S1_at

Description gb:AK070661.1
DB_XREF= gi:32980685
TID=Os.7871.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056F17, full insert sequence.
FL= gb:AK066434.1 gb:AK103991.1 gb:AK070661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0911010/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein
LOC_Os03g09100Os.13903.1.S1_at10/113+4705256..4713120anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os03g09110Os.7871.1.S1_at10/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09110Os.50644.2.S1_x_at1/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09120Os.52977.1.S1_at11/113+4727821..4729370expressed protein
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7871.1.S1_at--693--1551NONE
AGCTTGCTACAGGTTCTGCCATCAG
NONE
Os.7871.1.S1_at--1049--9191Chr03:4717324..4717348 (25 bp)
TGCCATCAGCGTCTATCAGTTATTT
LOC_Os03g09110
Os.7871.1.S1_at--234--6751Chr03:4717228..4717252 (25 bp)
GTTCAAGAAGCCCAGCTCACATTAC
LOC_Os03g09110
Os.7871.1.S1_at--889--6811Chr03:4717167..4717191 (25 bp)
GTTTTTGTAGCATTTCTTCACGGAA
LOC_Os03g09110
Os.7871.1.S1_at--638--7051Chr03:4717124..4717148 (25 bp)
GTAACTTTATCTTGGCCAAAGCCTG
LOC_Os03g09110
Os.7871.1.S1_at--106--2671Chr03:4717106..4717130 (25 bp)
AAGCCTGAAGCATTGTTCGCTCGAA
LOC_Os03g09110
Os.7871.1.S1_at--556--4791Chr03:4717088..4717112 (25 bp)
GCTCGAAGCTTTTCACCACAAGATT
LOC_Os03g09110
Os.7871.1.S1_at--576--8891Chr03:4717050..4717074 (25 bp)
TGAGGTCTTGTTCGACATCTGATTC
LOC_Os03g09110
Os.7871.1.S1_at--505--5671Chr03:4717037..4717061 (25 bp)
GACATCTGATTCGATCACCGATCTG
LOC_Os03g09110
Os.7871.1.S1_at--505--2871Chr03:4716900..4716924 (25 bp)
AAGTGGGTTTGCTACTTGCTACAAC
LOC_Os03g09110
Os.7871.1.S1_at--717--1091Chr03:4716869..4716893 (25 bp)
AGTGGCATGTTGATTCCCTTTTGCA
LOC_Os03g09110
Target Sequence 
AGCTTGCTACAGGTTCTGCCATCAGCGTCTATCAGTTATTTCGTATATGAGTTAATGAAGATAGTCCTGAAAGTGGAATG
AATGCAAATTAATTCTTGAGCATGCACATCAAGTTCAAGAAGCCCAGCTCACATTACCTTGACAAAATTCAAGTAAACAG
CGCATTTAGATCTGTTTTTGTAGCATTTCTTCACGGAAGCTTCAAAGGCCGTGGGAGTAACTTTATCTTGGCCAAAGCCT
GAAGCATTGTTCGCTCGAAGCTTTTCACCACAAGATTACCTTATACACGATGAGGTCTTGTTCGACATCTGATTCGATCA
CCGATCTGTTGCAGATTGATCTGTCATAGCAAAAACATATGGGCTTCTTGCCCTTCAGATTTCAATTAACAAATTTTCAA
CTTTTCATTTTTGATGTATTGATGCATCGACTGGAAAGGAAAGTGGGTTTGCTACTTGCTACAACCTNCAAAGTGGCATG
TTGATTCCCTTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis