Browse Element(s) Details


Os.52996.1.S1_at

Description gb:AK070349.1
DB_XREF= gi:32980373
TID=Os.52996.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054G11, full insert sequence.
FL= gb:AK070349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3609011/11ribosomal protein L28 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36020NANA7+21549834..21550448hypothetical protein
LOC_Os07g36030OsAffx.25936.1.S1_s_at9/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.7.S1_s_at8/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.2.S1_x_at6/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36030OsAffx.25936.5.S1_x_at2/117+21552898..21555936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g36040OsAffx.28773.1.S1_at10/117+21557089..21557835Strictosidine synthase family protein
LOC_Os07g36050OsAffx.5546.1.S1_at11/117+21559823..21560332hypothetical protein
LOC_Os07g36060OsAffx.28773.1.S1_at4/117+21562362..21563417Strictosidine synthase family protein
LOC_Os07g36070OsAffx.15821.1.S1_at10/117+21564127..21567628hypothetical protein
LOC_Os07g36070OsAffx.16289.1.S1_x_at1/117+21564127..21567628hypothetical protein
LOC_Os07g36080Os.11078.1.S1_a_at11/117+21572752..21574339Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative, expressed
LOC_Os07g36090Os.52996.1.S1_at11/117+21574541..21577636ribosomal protein L28 containing protein, expressed
LOC_Os07g36100NANA7+21578258..21579010transposon protein, putative, unclassified
LOC_Os07g36110Os.54499.1.S1_at11/117+21581163..21582268expressed protein
LOC_Os07g36120OsAffx.28774.1.S1_at10/117+21585408..21587564hypothetical protein
LOC_Os07g36130Os.13874.4.S1_at8/117+21588126..21589281Histone H2A, putative, expressed
LOC_Os07g36140Os.12592.1.S1_at11/117+21590798..21591895Histone H2A, putative, expressed
LOC_Os07g36150Os.52829.1.S1_at11/117+21593104..21599029Formin Homology 2 Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52996.1.S1_at--815--6271Chr07:21576072..21576096 (25 bp)
GATGTATTCACAGCTAGCTCAAATG
LOC_Os07g36090
Os.52996.1.S1_at--785--4831Chr07:21576056..21576080 (25 bp)
GCTCAAATGGAGGTAGGCTTCTTCT
LOC_Os07g36090
Os.52996.1.S1_at--1047--4871Chr07:21575948..21575972 (25 bp)
GCTTTGGCTAAGCAGACTCAGCTAG
LOC_Os07g36090
Os.52996.1.S1_at--85--8891Chr07:21574847..21574871 (25 bp)
TGAGTGCCACTGACCAAATAATGGA
LOC_Os07g36090
Os.52996.1.S1_at--1084--8011Chr07:21574825..21574849 (25 bp)
GGAGGATTTTCGTTTCATATAAAGC
LOC_Os07g36090
Os.52996.1.S1_at--980--611Chr07:21574791..21574815 (25 bp)
ATGCTGAGTCAGTAACCCCTGTTTA
LOC_Os07g36090
Os.52996.1.S1_at--1067--6091Chr07:21574736..21574760 (25 bp)
GAGTCTAATACTATCAGCATGTGGG
LOC_Os07g36090
Os.52996.1.S1_at--284--171Chr07:21574618..21574642 (25 bp)
ATTTTGTATCTTCTACTACTGCCCA
LOC_Os07g36090
Os.52996.1.S1_at--375--9911Chr07:21574602..21574626 (25 bp)
TACTGCCCATTCAACTTAAACGTCG
LOC_Os07g36090
Os.52996.1.S1_at--1037--7211Chr07:21574581..21574605 (25 bp)
GTCGAAATAATCTATGCTTGCCAGG
LOC_Os07g36090
Os.52996.1.S1_at--945--7311Chr07:21574544..21574568 (25 bp)
GTGCTACGGAGCTATGCCGTTTTTA
LOC_Os07g36090
Target Sequence 
GATGTATTCACAGCTAGCTCAAATGGAGGTAGGCTTCTTCTCTCCTGAGGAAGAGACTAAGATCGAACAGGGTTTTGAGG
AGGCTCGAGCTGCCAAGAGAGAGCACCGCAGGGAAGCAAGAAGAGCTTTGGCTAAGCAGACTCAGCTAGAAGCTGGTAAC
GCTGGTGGTGACAAANCAGCTGAAGCTGCTTCTAATGNNGCNNTNNNGTNCTNNNNNNNACNNNNCNNNNNNNNNTNNNN
GGTCNAAAGGAGAATCANTTGAGTGCCACTGACCAAATAATGGAGGATTTTCGTTTCATATAAAGCNANGGGATCATATG
CTGAGTCAGTAACCCCTGTTTACTGGCAGCAGCAGCNAGTGTATGGTAAGCNTGGAGTCTAATACTATCAGCATGTGGGT
GTTGTAAGCNAGTTGCTGAANNAAATCAGTTAGGTGGAAATTTTGTACACTTACTGAATACNTCGTGTCAGAGTTCAGAT
AACTTTCTTGTAGAATTTTGTATCTTCTACTACTGCCCATTCAACTTAAACGTCGAAATAATCTATGCTTGCCAGGATAC
GTGGTAATGTGCTACGGAGCTATGCCGTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis