Browse Element(s) Details


Os.53001.1.S1_at

Description gb:AK070372.1
DB_XREF= gi:32980396
TID=Os.53001.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050B02, full insert sequence.
FL= gb:AK070372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1914011/11adenylate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19120NANA8+11423984..11426286retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19130OsAffx.17068.1.S1_at11/118+11435333..11435794hypothetical protein
LOC_Os08g19140Os.53001.1.S1_at11/118+11436299..11447193adenylate kinase family protein, putative, expressed
LOC_Os08g19150OsAffx.5874.1.S1_at11/118+11452315..11452824hypothetical protein
LOC_Os08g19160Os.54101.1.S1_x_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19160Os.54241.1.S1_at11/118+11454015..11456370Endomembrane protein 70 containing protein, expressed
LOC_Os08g19170Os.7479.1.A1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170OsAffx.29271.1.S1_at11/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.1.S1_s_at10/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19170Os.25401.2.S1_at9/118+11456662..11462366G-patch domain containing protein, expressed
LOC_Os08g19180OsAffx.31278.1.S1_at7/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19180OsAffx.31379.1.S1_at1/118+11463796..11466538Transposable element protein, putative, MuDR
LOC_Os08g19190OsAffx.29272.3.S1_x_at11/118+11467146..11468858hypothetical protein
LOC_Os08g19190OsAffx.29272.2.S1_x_at7/118+11467146..11468858hypothetical protein
LOC_Os08g19200OsAffx.5875.1.S1_at11/118+11470766..11471227hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004017molecular_functionadenylate kinase activity
GO:0019201molecular_functionnucleotide kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53001.1.S1_at--149--8891Chr08:11437615..11437639 (25 bp)
TGAGGCTAAAATATGCTGCATCTTT
LOC_Os08g19140
Os.53001.1.S1_at--533--431Chr08:11437596..11437620 (25 bp)
ATCTTTTGAGACTTGTTATTCCTTC
LOC_Os08g19140
Os.53001.1.S1_at--769--10211Chr08:11437580..11437604 (25 bp)
TATTCCTTCCGGCTTCTCTTCTATG
LOC_Os08g19140
Os.53001.1.S1_at--559--8071Chr08:11437388..11437556 (25 bp)
GGAGCTCTAAGGATGGCTTATCCTA
LOC_Os08g19140
Os.53001.1.S1_at--363--5971Chr08:11437289..11437313 (25 bp)
GAGAAGCCAACTCCTGATGAAATCA
LOC_Os08g19140
Os.53001.1.S1_at--178--2271Chr08:11437270..11437294 (25 bp)
AAATCACCAATGCATTCAGACCACG
LOC_Os08g19140
Os.53001.1.S1_at--1111--5511Chr08:11436686..11436709 (24 bp)
GAAAAGTCAGCGTCTGGATTCTGGG
LOC_Os08g19140
Os.53001.1.S1_at--493--7871Chr08:11436436..11436460 (25 bp)
GGTTTAGTAAATTCTCCCAGGCATC
LOC_Os08g19140
Os.53001.1.S1_at--402--3491Chr08:11436419..11436443 (25 bp)
CAGGCATCCAACATTCATAGAGCGA
LOC_Os08g19140
Os.53001.1.S1_at--18--10031Chr08:11436402..11436426 (25 bp)
TAGAGCGAAATGCTTGTTTTCCTGT
LOC_Os08g19140
Os.53001.1.S1_at--469--9231Chr08:11436377..11436401 (25 bp)
TCCTACACTCGACCATTTCTAAATT
LOC_Os08g19140
Target Sequence 
TGAGGCTAAAATATGCTGCATCTTTTGAGACTTGTTATTCCTTCCGGCTTCTCTTCTATGCTGGNTCATTTTATCCTATT
ATGGGAGCTCTAAGGATGGCTTATCCTAATAAATATGAGATTTATCGAAGGGTTGATGAACCCAATGGACAAGAACGATA
TGTTCTCTTAGAGGAATTTGTGGAGAAGCCAACTCCTGATGAAATCACCAATGCATTCAGACCACGTAAAAACGAAAATG
AAAAGTCAGCGTCTGGATTCTGGGGTTTTTTGAGTGGTATATTATGAGGCAAACATTTCAGTAAAGGCTGAGTAAGAACA
ACTGAACCTTGGCCTTTTTTTTTTCTTTTTAATCGTCCATGTAAATATAAGCAGCCATAATGTGAAGCAAATAATTGATT
CACAGGTTTAGTAAATTCTCCCAGGCATCCAACATTCATAGAGCGAAATGCTTGTTTTCCTGTTCCTACACTCGACCATT
TCTAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis