Browse Element(s) Details


Os.53011.1.S1_x_at

Description gb:AK070424.1
DB_XREF= gi:32980448
TID=Os.53011.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050J01, full insert sequence.
FL= gb:AK070424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1246010/11expressed protein
LOC_Os06g295802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g203302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed
LOC_Os05g12500NANA5+7163380..7163658hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53011.1.S1_x_at--617--1954Chr12:22872472..22872495 (24 bp)
ACTGTGTTACTTTGTTTGGTTTCAT
NONE
Os.53011.1.S1_x_at--593--1212Chr12:22872370..22872540 (25 bp)
AGTTTTCTATTATCAATTATGTGGT
NONE
Os.53011.1.S1_x_at--1044--7494Chr11:11240233..11240252 (20 bp)
GTGGTTTTGGTATTATGCTACGTAT
NONE
Os.53011.1.S1_x_at--596--4855Chr11:9480848..9480871 (24 bp)
GCTACGTATTCATATTTCACTTCAT
NONE
Os.53011.1.S1_x_at--810--3653Chr11:11240268..11240292 (25 bp)
CTTCATGTTCAAGTTCACAACGTTA
NONE
Os.53011.1.S1_x_at--249--132Chr11:11723177..11723197 (21 bp)
ATTCATGTTTCATTCTTCTGGCGGA
LOC_Os11g20330
Os.53011.1.S1_x_at--549--6831Chr05:7137959..7137983 (25 bp)
GTTTCATTCTTCTGGCGGAAGTTTT
LOC_Os05g12460
Os.53011.1.S1_x_at--493--9633Chr09:5474807..5474966 (25 bp)
TCATGGGAATGCAATTTGGATCTTC
NONE
Os.53011.1.S1_x_at--214--10711Chr05:7137688..7137712 (25 bp)
TTGCGGAGTATTTTTACTCACTCTT
LOC_Os05g12460
Os.53011.1.S1_x_at--688--6813Chr04:9594282..9594307 (25 bp)
GTTTCTACTTAGATAAGTTTTGCGT
NONE
Os.53011.1.S1_x_at--159--10711NONE
TTGCGTAGAACTTAAGAAGGTCATT
NONE
Target Sequence 
ACTGTGTTACTTTGTTTGGTTTCATTTATCCAATTATTATTCAAAGTTTTCTATTATCAATTATGTGGTTTTGGTATTAT
GCTACGTATTCATATTTCACTTCATGTTCAAGTTCACAACGTTATTCATGTTTCATTCTTCTGGCGGAAGTTTTTGTTTA
CATTATTCAAGTACCATGCGTAGTCATGGGAATGCAATTTGGATCTTCATTCATGATCCTTGAGAAGAGCTGATCACACT
TGCTCGGCTTATCGGTAATGCTAAGAGGATATTCACACCTGCCCGGGAGGGAACTACTACTTTTTGCCTCCTTCGTTTTA
AATTAAAGGAAGACAAATGTTTCATATTGGTTTTCTTATTGCATTAAACCTGTGTATGTTTTACTAGTTCAATATTATAC
TTGCGGAGTATTTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGATATTGATCGGCACGGGACGGGAGT
AGCACCCTTGAACTACACATTATTATTGCACACTATTAAAATTTAGTTTTAGATTATGTTTCTACTTAGATAAGTTTTGC
GTAGAACTTAAGAAGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53011.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis