Browse Element(s) Details


Os.53046.1.S1_s_at

Description gb:AK070587.1
DB_XREF= gi:32980611
TID=Os.53046.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062H24, full insert sequence.
FL= gb:AK070587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7133011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71330Os.53046.1.S1_at11/111+41670176..41671113expressed protein
LOC_Os01g71330Os.53046.1.S1_s_at11/111+41670176..41671113expressed protein
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53046.1.S1_s_at--866--1311Chr01:41670611..41670635 (25 bp)
AGATGGAGTCCAACAAAGCGATAAT
LOC_Os01g71330
Os.53046.1.S1_s_at--971--9291Chr01:41670741..41670765 (25 bp)
TCCGCGCACTAGAAACAGGCCAAAG
LOC_Os01g71330
Os.53046.1.S1_s_at--979--6431Chr01:41670829..41670853 (25 bp)
GATCATCGCCTTGCAAATGCTTCCG
LOC_Os01g71330
Os.53046.1.S1_s_at--110--4131Chr01:41670835..41670859 (25 bp)
CGCCTTGCAAATGCTTCCGTTGGAT
LOC_Os01g71330
Os.53046.1.S1_s_at--126--7991Chr01:41670876..41670900 (25 bp)
GGATGCAAGAGCCAATTAATTTAGT
LOC_Os01g71330
Os.53046.1.S1_s_at--538--10331Chr01:41670895..41670919 (25 bp)
TTTAGTCAATAGTCATAGGCCCAAG
LOC_Os01g71330
Os.53046.1.S1_s_at--630--7131Chr01:41670906..41670930 (25 bp)
GTCATAGGCCCAAGCATTCAGAGGT
LOC_Os01g71330
Os.53046.1.S1_s_at--84--8411Chr01:41670912..41670936 (25 bp)
GGCCCAAGCATTCAGAGGTTAGAGA
LOC_Os01g71330
Os.53046.1.S1_s_at--709--4271Chr01:41670955..41670979 (25 bp)
CCTGTAGTTTAGAACATCAGATGGA
LOC_Os01g71330
Os.53046.1.S1_s_at--964--2151Chr01:41671023..41671047 (25 bp)
ACAGCTGGAGAGGAGTCTGCTACTA
LOC_Os01g71330
Os.53046.1.S1_s_at--10--6111Chr01:41671035..41671059 (25 bp)
GAGTCTGCTACTAGAAGAATCGTCC
LOC_Os01g71330
Target Sequence 
AGATGGAGTCCAACAAAGCGATAATGGAAGAGAATGAGGACTTCGAGCAAGACGGCGGAGGCGAAGAAGAGGAGGAGGAC
GCCGAGCAGCCGGCGCCAGTGGAGAAGGAGGGAGTTCTTGTTGCTGCTGCTCCGCGCACTAGAAACAGGCCAAAGAGGGA
GGTACAGTAGAGTGGAAGAGCAGAAAAAGCATCTCGGTTTTTCTTGTTCCTTATATGTGATCATCGCCTTGCAAATGCTT
CCGTTGGATTGACAAATTATGCAATGGATGCAAGAGCCAATTAATTTAGTCAATAGTCATAGGCCCAAGCATTCAGAGGT
TAGAGAAATGATTGGTGTACGTGGCCTGTAGTTTAGAACATCAGATGGAGGAATGTGCAGCCTTAAGACGGCTCAGCTCA
GCTGTGCAGGTTACAGCTGGAGAGGAGTCTGCTACTAGAAGAATCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53046.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis