Browse Element(s) Details


Os.53073.1.S1_at

Description gb:AK070699.1
DB_XREF= gi:32980723
TID=Os.53073.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056I20, full insert sequence.
FL= gb:AK070699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5188011/11amine oxidase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51920OsAffx.12604.1.S1_at9/112+31793780..31794667hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53073.1.S1_at--525--10091Chr02:31768038..31768062 (25 bp)
TAGGATCTGGCTCGCTTTTCCTCTA
LOC_Os02g51880
Os.53073.1.S1_at--937--5711Chr02:31767895..31767919 (25 bp)
GACTCTGGGTCAAGCCTTATATCTC
LOC_Os02g51880
Os.53073.1.S1_at--626--251Chr02:31767877..31767901 (25 bp)
ATATCTCGGATAAAAGCTGCTGCTA
LOC_Os02g51880
Os.53073.1.S1_at--753--6611Chr02:31767830..31767854 (25 bp)
GTTGGAATGATTCACTGTCAGCTGT
LOC_Os02g51880
Os.53073.1.S1_at--424--7071Chr02:31767807..31767831 (25 bp)
GTAATAGTCGTGAGCGCTGAGCATT
LOC_Os02g51880
Os.53073.1.S1_at--1081--4931Chr02:31767787..31767811 (25 bp)
GCATTGACTTGCATGCTCAGCATAG
LOC_Os02g51880
Os.53073.1.S1_at--1150--151Chr02:31767619..31767643 (25 bp)
ATTATTGCCATCACTTTCTGTGCAC
LOC_Os02g51880
Os.53073.1.S1_at--214--5131Chr02:31767598..31767622 (25 bp)
GCACAAATGATACACCACTCTGAGA
LOC_Os02g51880
Os.53073.1.S1_at--435--3331Chr02:31767583..31767607 (25 bp)
CACTCTGAGACTACTTTGATGGCAT
LOC_Os02g51880
Os.53073.1.S1_at--539--2831Chr02:31767536..31767560 (25 bp)
AAGTTTTATCTAGCCCTTGTTATCA
LOC_Os02g51880
Os.53073.1.S1_at--406--6791Chr02:31767518..31767542 (25 bp)
GTTATCATTTCTTCTGACTTTCAGG
LOC_Os02g51880
Target Sequence 
TAGGATCTGGCTCGCTTTTCCTCTATGGTTTAATTATGCGAAAAAATGTAGCCNATTTAGCTNGCANATGGAGGGTGATG
AGCAACGATTGAGTACNCTGTACCGAGATTTTGGGACNAAACTCGTGGGTTTAGATGGCTTGGGTGACTCTGGGTCAAGC
CTTATATCTCGGATAAAAGCTGCTGCTAGGAAATAATACCAAGCCAAGATGTTGGAATGATTCACTGTCAGCTGTAATAG
TCGTGAGCGCTGAGCATTGACTTGCATGCTCAGCATAGTTACTGACCCNTGGAGTAATTCGTTCATTTCATTGATTACCT
TAAGCATATTAACTCTGATCCAAGGTGTAAGTTGTGCCAATGTTATGCTGATAAAACNATGGAGAGTATTTGAAGATCAT
ATTACCATGGAAATAATGGAAGATTATTGCCATCACTTTCTGTGCACAAATGATACACCACTCTGAGACTACTTTGATGG
CATCGTTACATATATTAATTATGTTAAGTTTTATCTAGCCCTTGTTATCATTTCTTCTGACTTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis