Browse Element(s) Details


Os.53089.1.S1_at

Description gb:AK070769.1
DB_XREF= gi:32980792
TID=Os.53089.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069F16, full insert sequence.
FL= gb:AK070769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1026010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10240OsAffx.29131.1.S1_at10/118+5933187..5934569hypothetical protein
LOC_Os08g10240Os.50819.1.S1_at1/118+5933187..5934569hypothetical protein
LOC_Os08g10250Os.52458.1.S1_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52458.1.S2_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.1.A1_s_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.2.S1_a_at11/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.27297.3.A1_a_at10/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10250Os.52473.1.S1_at2/118+5938637..5954941retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10260Os.53089.1.S1_at10/118+5958066..5961799NB-ARC domain containing protein, expressed
LOC_Os08g10270OsAffx.5775.1.S1_at10/118+5964086..5967450hypothetical protein
LOC_Os08g10280NANA8+5969645..5969950hypothetical protein
LOC_Os08g10290OsAffx.5776.1.S1_x_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed
LOC_Os08g10290OsAffx.5776.1.S1_at10/118+5974584..5982597SHR5-receptor-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53089.1.S1_at--301--7911Chr08:5958730..5958754 (25 bp)
GGTTGCGTCGAGTTCCTAGATGGAT
LOC_Os08g10260
Os.53089.1.S1_at--18--2571Chr08:5958651..5958675 (25 bp)
AACTGATGAGGTTCGGCTCCTTGGA
LOC_Os08g10260
Os.53089.1.S1_at--931--8051Chr08:5958629..5958653 (25 bp)
GGAGAGCTACCTTCACTCAGTGAAC
LOC_Os08g10260
Os.53089.1.S1_at--53--2551Chr08:5958607..5958631 (25 bp)
AACTCTGCCTGAGCGTGAAGCGTTT
LOC_Os08g10260
Os.53089.1.S1_at--437--1071Chr08:5958549..5958573 (25 bp)
AGGGTTCCCAGCATTGGAGTGTCTT
LOC_Os08g10260
Os.53089.1.S1_at--627--6611NONE
GTTGGCATTGAGCACCTACTGGACA
NONE
Os.53089.1.S1_at--210--10491Chr08:5958365..5958389 (25 bp)
TTACATCCGGTTACTGACACAGCAG
LOC_Os08g10260
Os.53089.1.S1_at--11--4251Chr08:5958252..5958276 (25 bp)
CCGGATCCGAAGTGGTAGCCTCATA
LOC_Os08g10260
Os.53089.1.S1_at--1145--251Chr08:5958230..5958254 (25 bp)
ATAGGTGCAAACTCTTTAATCCGGC
LOC_Os08g10260
Os.53089.1.S1_at--990--3031Chr08:5958213..5958237 (25 bp)
AATCCGGCACAGTTTTACTTGTCAT
LOC_Os08g10260
Os.53089.1.S1_at--872--6071Chr08:5958187..5958211 (25 bp)
GAGTTTCTGCTTTGTTTCTCCTGAA
LOC_Os08g10260
Target Sequence 
GGTTGCGTCGAGTTCCTAGATGGATCAATGGTCACCTCCAAAACCTCTGCTTCCTCGTTCTTGATGTTACAGAGATGTCA
ACTGATGAGGTTCGGCTCCTTGGAGAGCTACCTTCACTCAGTGAACTCTGCCTGAGCGTGAAGCGTTTGGCTCCATGCAG
CGCATCCCTCGTATTCGGTGCAGGGTTCCCAGCATTGGAGTGTCTTGAATTCTTTTGCGGTGGAGATATATCACACCTGT
GCTTTGAGGCAGGGGTTATGCCCAATCTCAGAAAGATCATTCTGTTTTACATAGATATTGAATGGAGCGGCACCGCACCA
GTTGGCATTGAGCACCTACTGGACAAACAACTCCGATACATCCAATTACATCCGGTTACTGACACAGCAGTGGATGCCGA
GCGTATCAGCCTCGCATTCACAGAAGCTATAAGAGCACATACAAGCCGTGGTGGTGCTGGACCTTACCTGCGCTTCGCCC
GGATCCGAAGTGGTAGCCTCATAGGTGCAAACTCTTTAATCCGGCACAGTTTTACTTGTCATAGAGTTTCTGCTTTGTTT
CTCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis