Browse Element(s) Details


Os.53092.1.S1_at

Description gb:AK070782.1
DB_XREF= gi:32980805
TID=Os.53092.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063C24, full insert sequence.
FL= gb:AK070782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2807411/11XRN 5'-3' exonuclease N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28020NANA2+16585839..16589351retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28030OsAffx.2771.1.S1_at10/112+16590788..16592851hypothetical protein
LOC_Os02g28040Os.8097.1.A1_at10/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28040Os.52081.1.S1_at1/112+16596799..16606368lipase class 3 family protein, putative, expressed
LOC_Os02g28050OsAffx.12243.1.S1_at11/112+16609343..16610435hypothetical protein
LOC_Os02g28074Os.53092.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17802.1.S1_at11/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28074Os.17016.1.S1_at1/112+16611541..16628019XRN 5'-3' exonuclease N-terminus family protein, expressed
LOC_Os02g28100NANA2+16632414..16632620hypothetical protein
LOC_Os02g28110Os.54948.1.S1_at11/112+16633826..16635410Pyridoxal-dependent decarboxylase, pyridoxal binding domain containing protein, expressed
LOC_Os02g28120OsAffx.12244.1.S1_at11/112+16646594..16648663hypothetical protein
LOC_Os02g28120OsAffx.30891.1.S1_x_at2/112+16646594..16648663hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004534molecular_function5'-3' exoribonuclease activity
GO:0008409molecular_function5'-3' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53092.1.S1_at--558--2051Chr02:16612094..16612118 (25 bp)
ACTTAGTACCATATTGTCGTTTCAA
LOC_Os02g28074
Os.53092.1.S1_at--997--8291Chr02:16612154..16612178 (25 bp)
GGCTTCAATTATTTCTGCAGTTTAT
LOC_Os02g28074
Os.53092.1.S1_at--438--10372Chr02:16612186..16612210 (25 bp)
TTTTATTATTCTCTCTCACTGCACG
LOC_Os02g28074
Os.53092.1.S1_at--169--6851Chr02:16612301..16612325 (25 bp)
GTTTCGCCTGGGTAGCCAGAGTCAA
LOC_Os02g28074
Os.53092.1.S1_at--1059--4411Chr02:16612315..16612339 (25 bp)
GCCAGAGTCAATCCTTTGCATTTAT
LOC_Os02g28074
Os.53092.1.S1_at--1130--10371Chr02:16612343..16612367 (25 bp)
TTTTCTTGCATGTCGATCAGCTAGC
LOC_Os02g28074
Os.53092.1.S1_at--539--4751Chr02:16612373..16612397 (25 bp)
GCTGAAGCAATTGATCGGTCGAGAA
LOC_Os02g28074
Os.53092.1.S1_at--360--2931Chr02:16612399..16612423 (25 bp)
AAGGCATCCATGCTTTGGTTCAATT
LOC_Os02g28074
Os.53092.1.S1_at--867--4871Chr02:16612410..16612434 (25 bp)
GCTTTGGTTCAATTTTACAGGCGAG
LOC_Os02g28074
Os.53092.1.S1_at--542--751Chr02:16612624..16612648 (25 bp)
ATGTACCTCGTATTCTTTCTTAATT
LOC_Os02g28074
Os.53092.1.S1_at--223--591Chr02:16612662..16612686 (25 bp)
ATCCAAGGAGAGTCCATGCATGTTC
LOC_Os02g28074
Target Sequence 
ACTTAGTACCATATTGTCGTTTCAAGAATTAATCATGGATTTGTTTTTGTTGGTTGGCTTGGCTTCAATTATTTCTGCAG
TTTATGTACTTCTTTTATTATTCTCTCTCACTGCACGCTCTCTTTTTTTTAAAAAAAAATGGTTTAATTCCATGTGCAGA
TGGGGTTGCTCCGTGCGCCAAAATGAACGGAATGCGAAGAGGACGACGTTTCGCCTGGGTAGCCAGAGTCAATCCTTTGC
ATTTATTTATTTTCTTGCATGTCGATCAGCTAGCTAGCTGCTGAAGCAATTGATCGGTCGAGAAAAAGGCATCCATGCTT
TGGTTCAATTTTACAGGCGAGTGAAGAGGAGGAAATGCAGAAGATATCAGAAGGGGTCTCTGACCCCAATGTCATCACGC
CAGGGACTGAATTCATGGAGAAGATATCGCAAGCGCTCACGTACTACATCCGTGCCAGATTGAATAGCAGTGATCCAGGG
TGGAAACACATCATGGTTAATTAATTTTCTCTTGCACTTCTTCAGTATAAATGTACCTCGTATTCTTTCTTAATTTCCCG
TTTTTTTTATCCAAGGAGAGTCCATGCATGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis