Browse Element(s) Details


Os.53123.1.S1_at

Description gb:AK070928.1
DB_XREF= gi:32980951
TID=Os.53123.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074B05, full insert sequence.
FL= gb:AK070928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0665011/11transcription elongation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06620Os.47463.1.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620Os.14491.2.S1_x_at5/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06620OsAffx.380.1.S1_at2/1111+3194553..3206778transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06630OsAffx.18710.1.S1_at11/1111+3207208..3208083Ribosome inactivating protein
LOC_Os11g06640Os.47463.1.S1_x_at6/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06640Os.14491.2.S1_x_at5/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06650Os.53123.1.S1_at11/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06650Os.52124.1.S1_at1/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06660Os.8626.1.S1_x_at2/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.3.S1_x_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.1.S1_a_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53123.1.S1_at--441--6931Chr11:3230685..3230821 (25 bp)
GTAGGCATAACAACTCAAGCTCAGA
LOC_Os11g06650
Os.53123.1.S1_at--339--7891Chr11:3230657..3230681 (25 bp)
GGTTAGCAATGGGATCGCGTCGATA
LOC_Os11g06650
Os.53123.1.S1_at--1076--2411Chr11:3230624..3230648 (25 bp)
AAAACATAGAGCAAGCCCTGCGCCA
LOC_Os11g06650
Os.53123.1.S1_at--523--3831Chr11:3230607..3230631 (25 bp)
CTGCGCCAGCGCATCATAATGCAAG
LOC_Os11g06650
Os.53123.1.S1_at--615--3371Chr11:3230566..3230590 (25 bp)
CACCATTCTACTACTTCATCTTCTG
LOC_Os11g06650
Os.53123.1.S1_at--618--9571Chr11:3230197..3230572 (25 bp)
TCTTCTGCTCCAGCTAGGATGGTGA
LOC_Os11g06650
Os.53123.1.S1_at--820--5831Chr11:3230149..3230173 (25 bp)
GACCTTGAAAGGCTGGACTCTGCGA
LOC_Os11g06650
Os.53123.1.S1_at--828--8631Chr11:3229824..3229848 (25 bp)
TGGGTTCCCAGCAAGGCACCGGTGA
LOC_Os11g06650
Os.53123.1.S1_at--1080--7351Chr11:3229803..3229827 (25 bp)
GTGACATTGCATTTTCTGGGAACCC
LOC_Os11g06650
Os.53123.1.S1_at--69--7331Chr11:3229704..3229728 (25 bp)
GTGCTATGTATTGGCTAGCCTCAAC
LOC_Os11g06650
Os.53123.1.S1_at--625--2051Chr11:3229681..3229705 (25 bp)
ACTTCAGTCTGATATGTTCCATGTA
LOC_Os11g06650
Target Sequence 
GTAGGCATAACAACTCAAGCTCAGAGAGGGTTAGCAATGGGATCGCGTCGATAGCAGCGACAAAACATAGAGCAAGCCCT
GCGCCAGCGCATCATAATGCAAGGCAGATCAACAACACCCACCATTCTACTACTTCATCTTCTGCTCCAGCTAGGATGGT
GAAGGAACAGAAGGACAGTCATCTTGACCTTGAAAGGCTGGACTCTGCGAGGAAGAGACTCCAGGAGAATTACCAGGAAG
CACAAAATGCAAAAAAACAGAGGACGATTCAGGTGATGGACATCAATGAAATTCCGAAGCCGAAAAATAGAAATGCCTTC
ATCCGCAAGGGCAATGGGGGTGGGTTCCCAGCAAGGCACCGGTGACATTGCATTTTCTGGGAACCCAGATTTCAAATTTG
TCTTTTACAAGTTGCACTAAGAAGAAAAGGAGAAAAAAAAGAGAGGTTTCTTTTCTTCATGTGCTATGTATTGGCTAGCC
TCAACTTCAGTCTGATATGTTCCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis