Browse Element(s) Details


Os.53149.1.S1_at

Description gb:AK071018.1
DB_XREF= gi:32981041
TID=Os.53149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081H07, full insert sequence.
FL= gb:AK071018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4954011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g49540Os.53149.1.S1_at11/117+29676793..29678581hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53149.1.S1_at--836--9811Chr07:29678529..29678553 (25 bp)
TAACAAAGGAGCACCAGCCCTCAGG
LOC_Os07g49540
Os.53149.1.S1_at--1112--1551Chr07:29678274..29678298 (25 bp)
AGCTAGGAGTCTAAGGCGGCTATTC
LOC_Os07g49540
Os.53149.1.S1_at--51--4671Chr07:29678236..29678260 (25 bp)
GCGTGACAGAACTTTGTATGCCTTA
LOC_Os07g49540
Os.53149.1.S1_at--914--5971Chr07:29678208..29678232 (25 bp)
GAGAAATACAACCTCGCTGCCACTG
LOC_Os07g49540
Os.53149.1.S1_at--455--9351Chr07:29678195..29678219 (25 bp)
TCGCTGCCACTGTTGCTATGTGGAA
LOC_Os07g49540
Os.53149.1.S1_at--598--6611Chr07:29677737..29677761 (25 bp)
GTTGGATACATTTACTCCCTCCAAT
LOC_Os07g49540
Os.53149.1.S1_at--68--391Chr07:29677714..29677738 (25 bp)
ATCACAAGTATGTCCTGTTGGCTGT
LOC_Os07g49540
Os.53149.1.S1_at--465--6931Chr07:29677691..29677715 (25 bp)
GTAGGGCATCGACACAGTCCCAAGA
LOC_Os07g49540
Os.53149.1.S1_at--1127--10191Chr07:29677638..29677658 (21 bp)
TATTTCCAAGTGCAGCTACAGCTTT
LOC_Os07g49540
Os.53149.1.S1_at--103--8071Chr07:29677498..29677522 (25 bp)
GGAGAAACCAATTCCGTGTGCAGTT
LOC_Os07g49540
Os.53149.1.S1_at--727--7331Chr07:29677481..29677505 (25 bp)
GTGCAGTTGGAAATACACTTGCCTG
LOC_Os07g49540
Target Sequence 
TAACAAAGGAGCACCAGCCCTCAGGAGTTAAATACCAAAATGCTGAGGCAGAGCTAGGAGTCTAAGGCGGCTATTCCCTG
GAGTCCATGGCGTGACAGAACTTTGTATGCCTTAACAGAGAAATACAACCTCGCTGCCACTGTTGCTATGTGGAATTCGT
GGACGTAGTAATGGTAGAAGATAAGAGCAGAGCAAAAGAACACATTAAGCTGCAGGAATCATGTGTTGGATACATTTACT
CCCTCCAATCACAAGTATGTCCTGTTGGCTGTAGGGCATCGACACAGTCCCAAGACTGCAACTTGACTGATAATTTCTAT
TTTAATATATTTCCAAGTGCAGCTACAGCTTTGGAGAAACCAATTCCGTGTGCAGTTGGAAATACACTTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis