Browse Element(s) Details


Os.13926.1.S1_at

Description gb:AK059174.1
DB_XREF= gi:32969192
TID=Os.13926.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.13926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F04, full insert sequence.
FL= gb:AK059174.1 gb:AK100482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4952011/112-oxoglutarate dehydrogenase, E1 component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g49540Os.53149.1.S1_at11/117+29676793..29678581hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13926.1.S1_at--140--7571Chr07:29660302..29660326 (25 bp)
GGGCGCATATAGTTACATCTCCCCT
LOC_Os07g49520
Os.13926.1.S1_at--160--6991Chr07:29660332..29660356 (25 bp)
GTACGCCTCTATGAAGACTCTTGGG
LOC_Os07g49520
Os.13926.1.S1_at--867--7571Chr07:29660354..29660378 (25 bp)
GGGCGTGGTTCATTCGATGACATCA
LOC_Os07g49520
Os.13926.1.S1_at--155--3571Chr07:29660374..29660398 (25 bp)
CATCAAGTATGTGGGCAGGGCGCCT
LOC_Os07g49520
Os.13926.1.S1_at--44--931Chr07:29660472..29660496 (25 bp)
AGGCAGAGCCTATCAAGTTCCCCTG
LOC_Os07g49520
Os.13926.1.S1_at--822--1231Chr07:29660487..29660511 (25 bp)
AGTTCCCCTGATATGATGCATCTGT
LOC_Os07g49520
Os.13926.1.S1_at--1104--8651Chr07:29660509..29660533 (25 bp)
TGTGGTTTCCACTTGGTGCTTATAC
LOC_Os07g49520
Os.13926.1.S1_at--688--10271Chr07:29660574..29660598 (25 bp)
TTTGCACACATACCATACCATCTTA
LOC_Os07g49520
Os.13926.1.S1_at--1089--6831Chr07:29660628..29660652 (25 bp)
GTTTCTCTAGCTTGTTTGAGGCGAT
LOC_Os07g49520
Os.13926.1.S1_at--155--9031Chr07:29660675..29660699 (25 bp)
TGCACTATTTGAGCCTTCTTATCGT
LOC_Os07g49520
Os.13926.1.S1_at--998--951Chr07:29660702..29660726 (25 bp)
AGGAGGAACCTGTTTCGACGTGAGC
LOC_Os07g49520
Target Sequence 
GGGCGCATATAGTTACATCTCCCCTCGCCTGTACGCCTCTATGAAGACTCTTGGGCGTGGTTCATTCGATGACATCAAGT
ATGTGGGCAGGGCGCCTTCAGCTGCGACAGCTACTGGCTTCCTGTCGGTTCATGCGCAGGAGCAGACAGAGCTGGTAAAG
AAAGCACTGCAGGCAGAGCCTATCAAGTTCCCCTGATATGATGCATCTGTGGTTTCCACTTGGTGCTTATACTTGTGCAA
GACAAGTGTGTGCGAGCTCAGCTCGTCCAGCCTTTGCACACATACCATACCATCTTAAAAGTTTTGCTATGTATTTACAA
GCTACTGTTTCTCTAGCTTGTTTGAGGCGATTCGATTTGAATGTCGTGAATAATGCACTATTTGAGCCTTCTTATCGTTG
AGGAGGAACCTGTTTCGACGTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis