Browse Element(s) Details


OsAffx.28964.1.S1_at

Description tigr:9635.m05008
TID=OsAffx.28964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4951010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g49540Os.53149.1.S1_at11/117+29676793..29678581hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28964.1.S1_at--193--6291Chr07:29652488..29652512 (25 bp)
GATGTTCCCAGCACAGCTGAAACCA
LOC_Os07g49510
OsAffx.28964.1.S1_at--204--2371NONE
AAAGCCTGTCAGGACCTTGTTGGTA
NONE
OsAffx.28964.1.S1_at--1097--2151Chr07:29654262..29654286 (25 bp)
ACAGCCTTGGCTGATAATCTGCTAA
LOC_Os07g49510
OsAffx.28964.1.S1_at--779--451Chr07:29654278..29654302 (25 bp)
ATCTGCTAAACTGAGGACCGGCGAA
LOC_Os07g49510
OsAffx.28964.1.S1_at--562--2431Chr07:29654317..29654341 (25 bp)
AAAAGCGTCGGGAAGCTTCTGCTTC
LOC_Os07g49510
OsAffx.28964.1.S1_at--265--9071Chr07:29654336..29654360 (25 bp)
TGCTTCTCCCGATGGACATATCACA
LOC_Os07g49510
OsAffx.28964.1.S1_at--437--3071Chr07:29654441..29654465 (25 bp)
AATCATTGGGTGGTGTTCAGGTAAC
LOC_Os07g49510
OsAffx.28964.1.S1_at--704--7831Chr07:29654460..29654484 (25 bp)
GGTAACTTGATGTTGCCCTTAGAAA
LOC_Os07g49510
OsAffx.28964.1.S1_at--208--5371Chr07:29654499..29654523 (25 bp)
GAAGAGCTAGGTTGCGTACTTGCGT
LOC_Os07g49510
OsAffx.28964.1.S1_at--1010--2051Chr07:29654516..29654540 (25 bp)
ACTTGCGTCATTGCGCCAGGTGAAA
LOC_Os07g49510
OsAffx.28964.1.S1_at--569--4951Chr07:29654599..29654623 (25 bp)
GCATATCGGGATACTCTTTTGTACC
LOC_Os07g49510
Target Sequence 
GATGTTCCCAGCACAGCTGAAACCAGAGCTAAGAACAAAGCCTGTCAGGACCTTGTTGGTATCGGAAATAGCCATACATT
GAAGAACAGCCTTGGCTGATAATCTGCTAAACTGAGGACCGGCGAAACAGTGAGTGAACAAAAAGCGTCGGGAAGCTTCT
GCTTCTCCCGATGGACATATCACACAACGTATTTTCTCAAAATCTTTTTGATTACAATCCTTGGATGGATGCTGTTGAGG
CTTGTTATAACTAGTTAACTCGACAATCATTGGGTGGTGTTCAGGTAACTTGATGTTGCCCTTAGAAATACGACGCAGGG
CAGAAGAGCTAGGTTGCGTACTTGCGTCATTGCGCCAGGTGAAAGTGAACGACTCGTGAAGTGGTATGGCAGGATTAGTA
TGTACTTATTTTTAAGTAAATTGCATATCGGGATACTCTTTTGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis