Browse Element(s) Details


Os.53887.1.S1_at

Description gb:AK100615.1
DB_XREF= gi:32985824
TID=Os.53887.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108B01, full insert sequence.
FL= gb:AK100615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4948010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49440OsAffx.22063.1.S1_at1/117+29604103..29607708retrotransposon protein, putative, unclassified
LOC_Os07g49460Os.14563.1.S2_at11/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49460Os.14563.1.S1_at10/117+29615012..29627527Two-component response regulator-like PRR37, putative, expressed
LOC_Os07g49470Os.53368.1.S1_at11/117+29629278..29631774Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g49480Os.53887.2.S1_x_at11/117+29631922..29636670expressed protein
LOC_Os07g49480Os.53887.1.S1_at10/117+29631922..29636670expressed protein
LOC_Os07g49490Os.25754.2.S1_x_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49490OsAffx.16443.1.S1_at1/117+29639365..29641857retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49500NANA7+29642504..29648233retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g49510OsAffx.28964.1.S1_at10/117+29651445..29654687expressed protein
LOC_Os07g49510OsAffx.2557.1.S1_x_at1/117+29651445..29654687expressed protein
LOC_Os07g49520Os.13926.1.S1_at11/117+29655167..296607692-oxoglutarate dehydrogenase, E1 component family protein, expressed
LOC_Os07g49530Os.53311.1.S1_at10/117+29661669..29664616Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53887.1.S1_at--1017--6111Chr07:29632267..29632291 (25 bp)
GAGGGAGTAACTAGTAACCATTCAT
LOC_Os07g49480
Os.53887.1.S1_at--171--131Chr07:29632248..29632272 (25 bp)
ATTCATATACTTGGGTTCGCTTGGA
LOC_Os07g49480
Os.53887.1.S1_at--787--10631Chr07:29632233..29632257 (25 bp)
TTCGCTTGGAGCTGGACCACAGGCG
LOC_Os07g49480
Os.53887.1.S1_at--967--3471Chr07:29632214..29632238 (25 bp)
CAGGCGGTCGAATCTCGTGGTGTCA
LOC_Os07g49480
Os.53887.1.S1_at--605--7491Chr07:29632198..29632222 (25 bp)
GTGGTGTCACCCAGCTTATTAGATG
LOC_Os07g49480
Os.53887.1.S1_at--1115--7611Chr07:29632174..29632198 (25 bp)
GGGAACACATGCTTGTTACCATAGA
LOC_Os07g49480
Os.53887.1.S1_at--298--731NONE
ATGTTGTACACAAGGGTAGTCTCTA
NONE
Os.53887.1.S1_at--357--1231Chr07:29632033..29632057 (25 bp)
AGTTCCATGGAGAGCTAGCTCCGGC
LOC_Os07g49480
Os.53887.1.S1_at--1107--9991Chr07:29632018..29632042 (25 bp)
TAGCTCCGGCCATCTGATGCACGCA
LOC_Os07g49480
Os.53887.1.S1_at--797--5091Chr07:29632000..29632024 (25 bp)
GCACGCATCACGCTTGTCATTTTAG
LOC_Os07g49480
Os.53887.1.S1_at--476--4631Chr07:29631976..29632000 (25 bp)
GCGATCTGTATGCAACCTAGCTATT
LOC_Os07g49480
Target Sequence 
GAGGGAGTAACTAGTAACCATTCATATACTTGGGTTCGCTTGGAGCTGGACCACAGGCGGTCGAATCTCGTGGTGTCACC
CAGCTTATTAGATGGGAACACATGCTTGTTACCATAGATTTGCTATTATTTTGGAGGCAAAACTTATTGGCATTTGATAT
GTTGTACACAAGGGTAGTCTCTAGTGTTAAAATTATGGTTTCTGAGAGTAGAACATGAGTTTTAATTTTGAGGGAGTTCC
ATGGAGAGCTAGCTCCGGCCATCTGATGCACGCATCACGCTTGTCATTTTAGCGATCTGTATGCAACCTAGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis