Browse Element(s) Details


Os.53155.1.S1_s_at

Description gb:AK071072.1
DB_XREF= gi:32981095
TID=Os.53155.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077C16, full insert sequence.
FL= gb:AK071072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0587011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed
LOC_Os11g05860Os.9519.1.S1_at11/1111+2734343..2735367Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05870Os.53155.1.S1_s_at11/1111+2742264..2745674Harpin-induced protein 1 containing protein, expressed
LOC_Os11g05880Os.27320.1.S1_at11/1111+2755667..2760853exocyst subunit EXO70 family protein, putative, expressed
LOC_Os11g05890NANA11+2764620..2767925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g05900NANA11+2770311..2772910transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53155.1.S1_s_at--89--8691Chr11:2742619..2742723 (25 bp)
TGTGAAGGATCACTGCATTGTGGTC
LOC_Os11g05870
Os.53155.1.S1_s_at--27--10771Chr11:2742593..2742617 (25 bp)
TTGACTACCTCAGATGCTGATCTAT
LOC_Os11g05870
Os.53155.1.S1_s_at--379--4751Chr11:2742578..2742602 (25 bp)
GCTGATCTATGGGAGCATCTTCCGA
LOC_Os11g05870
Os.53155.1.S1_s_at--95--2751Chr11:2742527..2742551 (25 bp)
AAGAAGTTGATCTGCCGCTGATTGA
LOC_Os11g05870
Os.53155.1.S1_s_at--740--6411Chr11:2742519..2742543 (25 bp)
GATCTGCCGCTGATTGATGAGTGAT
LOC_Os11g05870
Os.53155.1.S1_s_at--278--10011Chr11:2742495..2742519 (25 bp)
TAGCTGCTGGGTTACTATAGTTTAC
LOC_Os11g05870
Os.53155.1.S1_s_at--599--6511Chr11:2742430..2742454 (25 bp)
GATTTATCCTTAATGGGTGGGTATA
LOC_Os11g05870
Os.53155.1.S1_s_at--358--10871Chr11:2742386..2742410 (25 bp)
TTGGCTAGAGTGATTATACCCTGGT
LOC_Os11g05870
Os.53155.1.S1_s_at--820--311Chr11:2742371..2742395 (25 bp)
ATACCCTGGTGGTTGTTTTGCACAC
LOC_Os11g05870
Os.53155.1.S1_s_at--895--7911Chr11:2742361..2742385 (25 bp)
GGTTGTTTTGCACACTGAGAGGAAT
LOC_Os11g05870
Os.53155.1.S1_s_at--839--7611Chr11:2742315..2742339 (25 bp)
GGGAACATTCATACTTTAAGCTACT
LOC_Os11g05870
Target Sequence 
TGTGAAGGATCACTGCATTGTGGTCATTGACTACCTCAGATGCTGATCTATGGGAGCATCTTCCGAAGGTACGGCAAGTT
AACTGGCGCTATAAGAAGTTGATCTGCCGCTGATTGATGAGTGATAGCTGCTGGGTTACTATAGTTTACCCGGCCACCAT
AGAATCCTTAACATGGAAAAGTCTGGATTGATTTATCCTTAATGGGTGGGTATATGACTTATGTTGGAGATAATTGGCTA
GAGTGATTATACCCTGGTGGTTGTTTTGCACACTGAGAGGAATTTAAACATGTATGGAACCACAGGGAACATTCATACTT
TAAGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53155.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis