Browse Element(s) Details


Os.53172.1.S1_at

Description gb:AK071190.1
DB_XREF= gi:32981213
TID=Os.53172.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088L13, full insert sequence.
FL= gb:AK071190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2041011/11aquaporin SIP2.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20370Os.2226.1.S1_at11/113+11501508..11503303Calmodulin, putative, expressed
LOC_Os03g20380Os.12261.1.S1_a_at11/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20380Os.39470.1.A1_x_at1/113+11505106..11510816CIPK-like protein 1, putative, expressed
LOC_Os03g20390OsAffx.25164.1.S1_at11/113+11520292..11520716hypothetical protein
LOC_Os03g20400OsAffx.25165.1.S1_at10/113+11521834..11522300hypothetical protein
LOC_Os03g20400OsAffx.8723.1.S1_at1/113+11521834..11522300hypothetical protein
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53172.1.S1_at--281--6111Chr03:11526328..11526352 (25 bp)
GAGTGAAGCTCATCCGAGCAGCTCT
LOC_Os03g20410
Os.53172.1.S1_at--1038--5931Chr03:11526313..11526337 (25 bp)
GAGCAGCTCTCCCTAAAGTAGGCAA
LOC_Os03g20410
Os.53172.1.S1_at--457--3271Chr03:11526291..11526315 (25 bp)
CAAAGGAGCTCCGTTAAGCGTTGGA
LOC_Os03g20410
Os.53172.1.S1_at--366--6071Chr03:11526268..11526292 (25 bp)
GAGTTCACCATGGAGCGTTAGCTGA
LOC_Os03g20410
Os.53172.1.S1_at--189--5671Chr03:11526168..11526192 (25 bp)
GACATGGATCTCGAGCATTTGGAAA
LOC_Os03g20410
Os.53172.1.S1_at--616--2991Chr03:11526144..11526168 (25 bp)
AATGACATTTCATCTCCTTAGCTCA
LOC_Os03g20410
Os.53172.1.S1_at--1005--6091Chr03:11526110..11526130 (21 bp)
GAGTCATGAACCCTGCATCTGCTTT
LOC_Os03g20410
Os.53172.1.S1_at--617--471Chr03:11525692..11525712 (21 bp)
ATCTGCTTTTGCTTGGGCCTATGCT
LOC_Os03g20410
Os.53172.1.S1_at--676--5671Chr03:11525653..11525676 (24 bp)
GACATTCGACCACCTACTTGTATAT
LOC_Os03g20410
Os.53172.1.S1_at--353--9891Chr03:11525639..11525663 (25 bp)
TACTTGTATATTGGCTTGCACCCCT
LOC_Os03g20410
Os.53172.1.S1_at--717--7951Chr03:11525415..11525439 (25 bp)
GGATCATTTTTATGCTGTAAGCCCC
LOC_Os03g20410
Target Sequence 
GAGTGAAGCTCATCCGAGCAGCTCTCCCTAAAGTAGGCAAAGGAGCTCCGTTAAGCGTTGGAGTTCACCATGGAGCGTTA
GCTGAAGGGTTGGCAACTTTCATGGTTGTTATAGTGTCGGTGACTCTTAAGAAGAAGGAGATGAAAGGGTTCTTTATGAA
GACATGGATCTCGAGCATTTGGAAAATGACATTTCATCTCCTTAGCTCAGATATAACTGGAGGAGTCATGAACCCTGCAT
CTGCTTTTGCTTGGGCCTATGCTCGAGGGGATCACACGACATTCGACCACCTACTTGTATATTGGCTTGCACCCCTCCAA
GCAACCTTGCTAGGAGTATGGGTCGTGACCTTATTAACTAAACCCAAGAAGATAGAGGAAGAAGCAGATGAAAGCAAAAC
CAAGAAGGAGTAGACTATTATTGATGTGGTAATGTTCGCCATTTATTGTGGAAGTGTGGAGCAAGAACTTCCATTTTTTT
CACAGGCAAGACTGGTGTTGAACTTATACAGACAGGATCATTTTTATGCTGTAAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis