Browse Element(s) Details


Os.53212.1.S1_at

Description gb:AK071386.1
DB_XREF= gi:32981409
TID=Os.53212.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092N19, full insert sequence.
FL= gb:AK071386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2166010/1126S protease regulatory subunit 6A homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os04g21670OsAffx.25936.1.S1_s_at7/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21670OsAffx.25936.7.S1_s_at5/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified
LOC_Os04g21690NANA4+12241721..12247641retrotransposon protein, putative, unclassified
LOC_Os04g21700NANA4+12248783..12250390transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21710Os.4923.1.S1_at11/114+12254502..12256920expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53212.1.S1_at--46--9771Chr04:12229166..12229190 (25 bp)
TAATCGGCCAGAAGTTCTTGATCCT
LOC_Os04g21660
Os.53212.1.S1_at--749--3651Chr04:12229140..12229164 (25 bp)
CTTTTCTGCGATCTGGCCGTTTAGA
LOC_Os04g21660
Os.53212.1.S1_at--471--5191Chr04:12228959..12229095 (25 bp)
GAATTCTGGAGATCCACTCCCGAAA
LOC_Os04g21660
Os.53212.1.S1_at--988--2771Chr04:12228905..12228929 (25 bp)
AAGAGTTGGCTTGCTGTACAGATGA
LOC_Os04g21660
Os.53212.1.S1_at--329--2311Chr04:12228862..12228886 (25 bp)
AAAGGCTGTATGCTTTGAGGCTAGC
LOC_Os04g21660
Os.53212.1.S1_at--627--1531Chr04:12228840..12228864 (25 bp)
AGCATGCTGGCATTTCACCGAGATG
LOC_Os04g21660
Os.53212.1.S1_at--477--1331Chr04:12228133..12228155 (23 bp)
AGAGGTTCGGCATGAGGACTTTGTC
LOC_Os04g21660
Os.53212.1.S1_at--556--8131Chr04:12228118..12228142 (25 bp)
GGACTTTGTCAGAGCAATTGCGCAA
LOC_Os04g21660
Os.53212.1.S1_at--717--2471Chr04:12228070..12228094 (25 bp)
AACAGCTTCAACTACTATGCATAGA
LOC_Os04g21660
Os.53212.1.S1_at--985--2491Chr04:12228034..12228058 (25 bp)
AACATCTTACCTTGTGTGCAGTTGG
LOC_Os04g21660
Os.53212.1.S1_at--762--5391NONE
GAAGCTACTGTCACCTAACTCAAAT
NONE
Target Sequence 
TAATCGGCCAGAAGTTCTTGATCCTGCTTTTCTGCGATCTGGCCGTTTAGATCAAAAGATTGAATTCCCTCATCCATCTG
AACAGGCTAGAGTTAGAATTCTGGAGATCCACTCCCGAAAAATGGACAAAAACCCTGATGTAAACTTTGAAGAGTTGGCT
TGCTGTACAGATGATTTTAATGGTGCACAGCTAAAGGCTGTATGCTTTGAGGCTAGCATGCTGGCATTTCACCGAGATGC
TACAGAGGTTCGGCATGAGGACTTTGTCAGAGCAATTGCGCAAGTAAAAGACGGGAATTACTGAACAACAGCTTCAACTA
CTATGCATAGAGGACACCATCTAACATCTTACCTTGTGTGCAGTTGGTTCTGAGACCAGACCAAGAAGCTACTGTCACCT
AACTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis